CX288693

Overview
NameCX288693
Unique NameCX288693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11220 contig Ccv1_Contig11220:924..1420. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288693 vs. ExPASy Swiss-Prot
Match: CDC16_HUMAN (Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 3
Query:    6 YEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEQETSLLSSLEFGS*----DGWLSSFYSCLIKKYDKENVVEAKFREIEKEKCDXXXXXXXXXXXXKNNTDLLACKAE-YYHQCGEYQKCFELTSVLLEKDPFHLKCTLVHLAAAMELGHSNELYLMACNL 497
            Y+AL+NR  A   YK A+K D  C+EA + L  +HMLT ++E  LL SL            L   +   +KKY+K +        +  E  D            + N D++   AE +Y+ C +++ C++LTSV++EKDPFH  C  VH+   +EL  +NEL+ ++  L
Sbjct:  140 YDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQEEKELLESLPLSKLCNEEQELLRFLFENKLKKYNKPS------ETVIPESVDGL----------QENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 291          
BLAST of CX288693 vs. ExPASy Swiss-Prot
Match: CDC16_MOUSE (Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 3
Query:    6 YEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEQETSLLSSLEFGS*----DGWLSSFYSCLIKKYDKENVVEAKFREIEKEKCDXXXXXXXXXXXXKNNTDLLACKAE-YYHQCGEYQKCFELTSVLLEKDPFHLKCTLVHLAAAMELGHSNELYLMACNL 497
            Y+AL+NR  A   YK A+K D  C+EA + L  +HMLT ++E  LL SL            L   +   +KKY+K +        +  E  D            + N D++   AE +Y+ C +++ C++LTS ++EKDPFH  C  VH+   +EL  +NEL+ ++  L
Sbjct:  140 YDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQEEKELLDSLPLNKLCAEEQELLRFVFENKLKKYNKPS------ETVIPESVDGL----------QENLDVVVSLAERHYYNC-DFKMCYKLTSTVMEKDPFHANCLPVHIGTLVELNKANELFYLSHKL 291          
BLAST of CX288693 vs. ExPASy Swiss-Prot
Match: CDC16_DICDI (Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum GN=anapc6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 3
Query:    6 YEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEQETSLLSSLEFGS*DGWLSSFYSCLIKKYD 215
            YE+++N  +A+ WY  A+  D  C+EA E L +NH+LT ++E SLL  L+F S D W+   YS  +KKYD
Sbjct:  312 YESMDNLKKAKFWYIKALLTDYNCFEAFESLTKNHLLTYQEEISLLEKLKFSSDDSWIKEIYSLSLKKYD 381          
BLAST of CX288693 vs. ExPASy Swiss-Prot
Match: CUT9_SCHPO (Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces pombe GN=cut9 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 49/168 (29.17%), Postives = 80/168 (47.62%), Query Frame = 3
Query:    6 YEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEQETSLLSSLEFGS*D----GWLSSFYSCLIKKYDKENVVEAKFREIEKEKCDXXXXXXXXXXXXKNNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKCTLVHLAAAMELGHSNELYLMACNL 497
            Y  L N  +A+  YK A+  D  CYEA + L+ NH+LT ++E  L+  L + +       +L S Y   + K   E+    + R  E                 + ++DLL CKA+       +     +T+ +LE DP++L    +HLA+  E G  N+LYL++ +L
Sbjct:  210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED----ELRRAE--------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365          
The following BLAST results are available for this feature:
BLAST of CX288693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CDC16_HUMAN6.971e-1933.73Cell division cycle protein 16 homolog OS=Homo sap... [more]
CDC16_MOUSE2.649e-1833.14Cell division cycle protein 16 homolog OS=Mus musc... [more]
CDC16_DICDI4.376e-1345.71Anaphase-promoting complex subunit 6 OS=Dictyostel... [more]
CUT9_SCHPO1.663e-1229.17Anaphase-promoting complex subunit cut9 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionC02003C11SK IF1 Citrus clementina cDNA clone C02003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288693 ID=CX288693; Name=CX288693; organism=Citrus clementina; type=EST; length=497bp
AAGCATATGAAGCCTTGGAAAATCGTGCCCAAGCTCGGCTGTGGTATAAA
GCAGCAATCAAAGCTGATCCTTTGTGTTATGAGGCTTTGGAATGCCTTAT
TGAAAATCACATGCTAACATGCGAGCAAGAAACAAGTTTACTTTCATCAT
TGGAATTTGGCTCTTAAGATGGATGGCTTTCTTCATTTTACTCATGTTTG
ATAAAAAAGTATGACAAGGAGAATGTTGTAGAAGCCAAATTTAGAGAAAT
TGAGAAAGAAAAATGTGATAGTGTCCATTCGAGCCTGTCCTTCTCACACA
GTCTAAAAAACAATACTGATCTTTTAGCCTGCAAAGCTGAGTACTATCAT
CAGTGTGGAGAATACCAAAAATGCTTTGAACTAACTTCTGTATTACTTGA
GAAAGACCCTTTCCATCTGAAATGTACCTTGGTGCACTTAGCTGCTGCTA
TGGAACTTGGACATTCAAATGAACTATATCTGATGGCATGCAATTTA
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