CX288694

Overview
NameCX288694
Unique NameCX288694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15349 contig Ccv1_Contig15349:609..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288694 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:    9 LASLSTFQQMWISKGEYDESGPSIVHRKCF 98
            LASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  347 LASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of CX288694 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:    9 LASLSTFQQMWISKGEYDESGPSIVHRKCF 98
            LASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  348 LASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CX288694 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:    9 LASLSTFQQMWISKGEYDESGPSIVHRKCF 98
            LASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  348 LASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CX288694 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:    9 LASLSTFQQMWISKGEYDESGPSIVHRKCF 98
            LASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  352 LASLSTFQQMWISKGEYDESGPSIVHRKCF 381
The following BLAST results are available for this feature:
BLAST of CX288694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACT3_SOYBN5.662e-11100.00Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ5.662e-11100.00Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI5.662e-11100.00Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA5.662e-11100.00Actin-2 OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC02003C12SK IF1 Citrus clementina cDNA clone C02003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288694 ID=CX288694; Name=CX288694; organism=Citrus clementina; type=EST; length=461bp
GCACGAGGCTTGCATCCCTCAGCACCTTCCAACAGATGTGGATCTCAAAG
GGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTA
AGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTT
TTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTA
AGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACA
AGCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTC
CTTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTC
CTTTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTT
GTGATGCTTTTCTATTTCATTTTCTAAATTTTCATATTTGAAGGTTTTTT
TTCTCCCCCTC
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