CX288696

Overview
NameCX288696
Unique NameCX288696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288696_ssr497 microsatellite CX288696_ssr497:497..520. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH2_ARATH (Adenosylhomocysteinase 2 OS=Arabidopsis thaliana GN=SAHH2 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.015e-77
Identity = 135/161 (83.85%), Postives = 145/161 (90.06%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP+TNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW EKS+GKYEKKVYVLPKHLDEKV            T+LTK+Q+DY+S+  +GPYKP+HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLGKLGARLTKLTKDQSDYVSIPVEGPYKPVHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_TOBAC (Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.244e-77
Identity = 137/161 (85.09%), Postives = 144/161 (89.44%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP+TNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW EKS+GKYEKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_NICSY (Adenosylhomocysteinase OS=Nicotiana sylvestris GN=SAHH PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.244e-77
Identity = 137/161 (85.09%), Postives = 144/161 (89.44%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP+TNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW EKS+GKYEKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_CATRO (Adenosylhomocysteinase OS=Catharanthus roseus GN=SAHH PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.244e-77
Identity = 137/161 (85.09%), Postives = 143/161 (88.82%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP+TNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW E+ TGKYEKKVYVLPKHLDEKV            T+LTK+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERKTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLTKDQADYISVPIEGPYKPAHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_LUPLU (Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.993e-76
Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM+DHMKKMKNNAIVCNIGHFDNEIDMLGLET+PGVKRITIKPQTDRWVFPETN+GII+LAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW EKS+GKYEKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.758e-75
Identity = 134/161 (83.23%), Postives = 142/161 (88.20%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDM GLET+PGVKRITIKPQTDRWVFP+TNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW E+S+GKYEKKVYVLPKHLDEKV            T+LTK+QADYI V  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMHGLETFPGVKRITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERSSGKYEKKVYVLPKHLDEKVAALHLGKFGAKLTKLTKDQADYIYVPVEGPYKPAHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH1_ARATH (Adenosylhomocysteinase 1 OS=Arabidopsis thaliana GN=SAHH1 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 4.908e-75
Identity = 132/161 (81.99%), Postives = 143/161 (88.82%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPET +GIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW EK++GKYEKKVYVLPKHLDEKV            T+L+K+Q+DY+S+  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETKAGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKASGKYEKKVYVLPKHLDEKVALLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MEDSA (Adenosylhomocysteinase OS=Medicago sativa GN=SAHH PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.865e-74
Identity = 134/161 (83.23%), Postives = 141/161 (87.58%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMV  MKKMKNNAIVCNIGHFDNEIDM GLETYPGVKRITIKPQTDRWVFPET SGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQ+ELWKEK++GKYEKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVSDMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETKSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQIELWKEKTSGKYEKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_PETCR (Adenosylhomocysteinase OS=Petroselinum crispum GN=SAHH PE=2 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 7.087e-74
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMV  M+KMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP+T  GII+LAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW EKS+GKYEKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVSDMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTGRGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MESCR (Adenosylhomocysteinase OS=Mesembryanthemum crystallinum GN=SAHH PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.087e-74
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIMVDHM+KMKNNAIVCNIGHFDNEIDMLGLE YPGVKRITIKPQTDR+VFPETN+GIIVLAEGRLM LGCATGHPSFVMSCSFTNQVIAQLELW E+++GKYEKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  325 TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLENYPGVKRITIKPQTDRFVFPETNTGIIVLAEGRLMKLGCATGHPSFVMSCSFTNQVIAQLELWNERASGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
The following BLAST results are available for this feature:
BLAST of CX288696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
SAHH2_ARATH4.015e-7783.85Adenosylhomocysteinase 2 OS=Arabidopsis thaliana G... [more]
SAHH_TOBAC5.244e-7785.09Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAH... [more]
SAHH_NICSY5.244e-7785.09Adenosylhomocysteinase OS=Nicotiana sylvestris GN=... [more]
SAHH_CATRO5.244e-7785.09Adenosylhomocysteinase OS=Catharanthus roseus GN=S... [more]
SAHH_LUPLU1.993e-7683.85Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH P... [more]
SAHH_SOLLC3.758e-7583.23Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH1_ARATH4.908e-7581.99Adenosylhomocysteinase 1 OS=Arabidopsis thaliana G... [more]
SAHH_MEDSA1.865e-7483.23Adenosylhomocysteinase OS=Medicago sativa GN=SAHH ... [more]
SAHH_PETCR7.087e-7481.99Adenosylhomocysteinase OS=Petroselinum crispum GN=... [more]
SAHH_MESCR7.087e-7481.99Adenosylhomocysteinase OS=Mesembryanthemum crystal... [more]

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Properties
Property NameValue
Genbank descriptionC02003D02SK IF1 Citrus clementina cDNA clone C02003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288696 ID=CX288696; Name=CX288696; organism=Citrus clementina; type=EST; length=612bp
ATTCGGCACGAGGAACAAGGACATCATCATGGTTGACCACATGAAGAAGA
TGAAGAACAATGCAATTGTTTGCAACATTGGTCACTTTGATAATGAAATT
GATATGCTCGGTCTTGAGACCTACCCGGGTGTTAAGCGCATTACCATCAA
GCCCCAAACTGATAGGTGGGTCTTCCCGGAGACCAACTCAGGCATCATCG
TGTTGGCTGAGGGACGTCTCATGAACTTGGGATGTGCCACTGGACACCCC
AGCTTTGTGATGTCCTGCTCCTTCACCAACCAGGTGATTGCCCAGCTTGA
GCTCTGGAAGGAGAAGAGCACCGGCAAGTACGAGAAGAAGGTGTACGTTC
TGCCCAAGCACCTCGATGAAAAGGTTGCTGCTCTTCACCTTGGCAAACTT
GGAGCTAAGCTCACCAGGCTCACCAAGGAGCAGGCTGACTACATCAGTGT
GTCCGCCGATGGTCCTTACAAGCCTCTTCACTACAGGTACTAAGTGGAAG
AAGAAGAAGAAGAAGAAGAAGAGTGAATGTTTTGAGGGAAAGAAACAAAA
TATTTGGCCGGCTTGATTGTTTTCAATGATGATCTGTAGTAGGATGTTAG
GTTTAAATTTCG
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