CX288698

Overview
NameCX288698
Unique NameCX288698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13561 contig Ccv1_Contig13561:808..1423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288698 vs. ExPASy Swiss-Prot
Match: SDG41_ARATH (Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana GN=SDG41 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23
Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 1 
Query:   67 KDEANQKLTDWMDEGTSEYLLVG-DPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVD 594
            KDEA  K+ D++ E   ++L    DP++CC+ +E++L  G+Q +  E  +      LRLH  H+++LNAY TLA+AY+IRSID          +     DMSR SAAYSL LA  + HLF +E S   ++A FW +AGE L  LA          P+L +  S     +C+KC +++
Sbjct:  309 KDEAVGKMNDYIQEAIDDFLSDNIDPKTCCEMIESVLHHGIQFK--EDSQPHC---LRLHACHYVALNAYITLATAYRIRSID---------SETGIVCDMSRISAAYSLFLAGVSHHLFCAERSFAISAAKFWKNAGELLFDLA----------PKLLMELSVESDVKCTKCLMLE 461
The following BLAST results are available for this feature:
BLAST of CX288698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SDG41_ARATH5.732e-2338.42Protein SET DOMAIN GROUP 41 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC02003D04SK IF1 Citrus clementina cDNA clone C02003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288698 ID=CX288698; Name=CX288698; organism=Citrus clementina; type=EST; length=616bp
ATTCGGCACGAGGCCTCGTGCCGAAATCCCGAGTTTTTGAGCTTGAGTTC
TGATTACAACTTCCTCAAGGACGAGGCAAATCAAAAGTTGACTGATTGGA
TGGATGAAGGTACATCTGAATATCTATTAGTTGGTGATCCTGAATCTTGC
TGCCAGAAGCTGGAGAACATCCTTACCCAAGGTCTGCAGGGTGAGCTTTT
AGAATCCGAAAAAGTGAAAATACAGCTGAATTTGAGGTTGCATCCCCTGC
ACCATCTCTCACTGAATGCCTATACAACACTGGCATCTGCATATAAAATC
CGTTCAATTGACTTATTAGCTCTCAATTCTGACATTGACGGACAGCAATT
GGAAGCTTTTGATATGAGCAGGACAAGTGCCGCATACTCATTACTGCTTG
CTAGTACGACTGACCATTTGTTCCGATCTGAGTCATCTCTGATTGCAGCG
TCTGCAAATTTCTGGGCAAGTGCAGGGGAGTCCTTGTTAACTCTTGCTAG
AAGCCCAGGGTGGAATTTATTTGTGAAACCGGAATTGCCTATTTCAACCT
CGTCCCCTGAGATTCATGAGTGCTCCAAGTGCTCACTAGTGGACAGATTG
CAAGTGAATCCATTTC
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