CX288699

Overview
NameCX288699
Unique NameCX288699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15419 contig Ccv1_Contig15419:118..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 3
Query:   12 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            D+T + +RD LWL  YPL+   I  YF+ S FYD+ CNNEQLKM+    LD+S L  M G+EY L + +EP  F+I KQ R  P  V     YYV++G+IYQAP+L  VF +R+ +++ ++
Sbjct:   65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHL 182          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3
Query:   12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE +KM+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H I
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3
Query:   12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE +KM+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H I
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3
Query:   12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE +KM+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H I
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 3
Query:   12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE +KM+    L +  L++M G+EY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H I
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   24 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            I + D  W+    L+   + DYF+   + FYDRTCNNE ++M+      +  L+ MTG+EY+   V +P L+VIRKQ R  P + TPM  YY++ G++YQAP L +VF++RI   +H++
Sbjct:   19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHL 132          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 3
Query:   12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374
            ++ GI + D  W+    L+ + + +YF+   + FYDRTCNNE +KM+      +  L+++ G+EY+L    EP L++IRKQ+R  P +V P+  YY++ G +YQAP L +V S+R   A+H I
Sbjct:    9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGI 126          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   63 LDRNMIFDYFTLSLFYDRTCNNEQLKMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            L+ N + +YF+LS FYDRT NN+ L M+            S H    S+LS+MTGIE++++   EP  ++IRKQKR  P+    +  YY++  ++YQAP++ +V S+R+
Sbjct:   20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.369e-17
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   63 LDRNMIFDYFTLSL--FYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            L    + DYF      FYD  CNNE ++M+ + P     L  M G+EY+L  V EP L+VIRKQ R  P + TP+  YY++ G++Y+AP L NV ++RI
Sbjct:   24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRI 119          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.834e-16
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   30 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLKMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            +R   W+  +  L  + + DYF  S FYDR  NN+ L+M++         + P    Q L KMTGIE++++ V EP L+VI+KQ R  P++ TP+ TY+V++ ++Y AP +  +  +R+
Sbjct:    9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRV 127          
The following BLAST results are available for this feature:
BLAST of CX288699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MED6_DICDI1.061e-2546.28Putative mediator of RNA polymerase II transcripti... [more]
MED6_PONAB4.612e-2143.09Mediator of RNA polymerase II transcription subuni... [more]
MED6_MOUSE4.612e-2143.09Mediator of RNA polymerase II transcription subuni... [more]
MED6_HUMAN4.612e-2143.09Mediator of RNA polymerase II transcription subuni... [more]
MED6_BOVIN6.024e-2142.28Mediator of RNA polymerase II transcription subuni... [more]
MED6_ANOGA6.660e-2041.18Mediator of RNA polymerase II transcription subuni... [more]
MED6_DANRE2.142e-1839.02Mediator of RNA polymerase II transcription subuni... [more]
MED6_CANAL1.063e-1739.45Mediator of RNA polymerase II transcription subuni... [more]
MED6_DROME2.369e-1743.43Mediator of RNA polymerase II transcription subuni... [more]
MED6_YARLI5.834e-1636.13Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionC02003D05SK IF1 Citrus clementina cDNA clone C02003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288699 ID=CX288699; Name=CX288699; organism=Citrus clementina; type=EST; length=375bp
CACCGGGTACGGACATGACGGGGATCTGCTTCAGGGACCAATTGTGGCTA
AACACATACCCACTTGATCGAAACATGATATTTGATTACTTCACGTTGTC
TCTGTTTTATGATAGGACTTGCAACAATGAGCAGCTCAAAATGCGGTCCA
TCCACCCTCTAGACATCTCTCAACTCTCGAAAATGACTGGCATTGAATAC
ATGCTTAGTGAAGTTATGGAGCCCCACCTCTTTGTTATCCGTAAGCAAAA
AAGGGATGGTCCTGAGAAAGTCACACCAATGCTCACTTATTATGTATTGG
ATGGTTCAATTTACCAAGCACCACAACTTTGCAATGTCTTTTCAGCTAGA
ATTGGACGGGCTCTCCACTATATAC
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