CX288700

Overview
NameCX288700
Unique NameCX288700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288700_ssr483 microsatellite CX288700_ssr483:483..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 5.981e-32
Identity = 71/118 (60.17%), Postives = 76/118 (64.41%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHSAGT+DV TKTGGPFGTIRHP ELAH+ANNGLDIAVRLL+PIK+ FPILSYADFYQ                                       LAGVVAVE+TGGPEIPFHPGR
Sbjct:   42 WHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQ---------------------------------------LAGVVAVEITGGPEIPFHPGR 120          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.598e-30
Identity = 68/118 (57.63%), Postives = 74/118 (62.71%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHSAGT+D  TKTGGPFGTI+H  ELAH ANNGLDIAVRLLEPIK+QFPI+SYADFYQ                                       LAGVVAVE+TGGPE+PFHPGR
Sbjct:   41 WHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQ---------------------------------------LAGVVAVEITGGPEVPFHPGR 119          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.396e-27
Identity = 63/118 (53.39%), Postives = 73/118 (61.86%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHSAGT+DV+++TGGPFGT+++P E +H AN GLDIAVRLL+PIK Q PILSYADFYQ                                       LAGVVAVEVTGGPE+PFHPGR
Sbjct:   42 WHSAGTFDVSSRTGGPFGTMKNPGEQSHAANAGLDIAVRLLDPIKDQLPILSYADFYQ---------------------------------------LAGVVAVEVTGGPEVPFHPGR 120          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 60/118 (50.85%), Postives = 72/118 (61.02%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHSAGT+DV++KTGGPFGT++ P EL+H AN GLDIAVR+LEPIK++ P +SYADFYQ                                       LAGVVAVEV+GGP +PFHPGR
Sbjct:   41 WHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQ---------------------------------------LAGVVAVEVSGGPAVPFHPGR 119          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 60/118 (50.85%), Postives = 72/118 (61.02%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHSAGT+DV++KTGGPFGT++ P EL+H AN GLDIAVR+LEPIK++ P +SYADFYQ                                       LAGVVAVEV+GGP +PFHPGR
Sbjct:   41 WHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQ---------------------------------------LAGVVAVEVSGGPAVPFHPGR 119          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.975e-23
Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WHSAGT+D  ++TGGPFGT+R   E AH AN+G+ IA+RLL+PI++QFP +S+ADF+Q                                       LAGVVAVEVTGGP+IPFHPGR
Sbjct:   41 WHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQ---------------------------------------LAGVVAVEVTGGPDIPFHPGR 119          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.807e-19
Identity = 53/118 (44.92%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH AGTYD  TKTGGP G+IR P E +H AN G+ IA+ LLEP+KQ+ P ++YAD YQ                                       LAGVVAVEVTGGP I + PGR
Sbjct:   40 WHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQ---------------------------------------LAGVVAVEVTGGPTIDYVPGR 118          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.807e-19
Identity = 53/118 (44.92%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH AGTYD  TKTGGP G+IR P E +H AN G+ IA+ LLEP+KQ+ P ++YAD YQ                                       LAGVVAVEVTGGP I + PGR
Sbjct:   40 WHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQ---------------------------------------LAGVVAVEVTGGPTIDYVPGR 118          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 53/118 (44.92%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH AGTYDVNTKTGG  G+IR+ +E  H +N GL IA+ LLEPIK + P ++YAD YQ                                       LAGVVAVEVTGGP + F PGR
Sbjct:   39 WHDAGTYDVNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQ---------------------------------------LAGVVAVEVTGGPTVEFIPGR 117          
BLAST of CX288700 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.098e-17
Identity = 50/118 (42.37%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  101 WHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQVIIIYIQLLTTENDLLYDHFLWITLDW*IDHGLCFIFLKLAGVVAVEVTGGPEIPFHPGR 454
            WH AGTYD  +KTGGP G+IR+ +E  H AN+GL IA+ L E +K + P ++YAD YQ                                       LAGVVAVEVTGGP+I F PGR
Sbjct:   39 WHDAGTYDAQSKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQ---------------------------------------LAGVVAVEVTGGPDIVFVPGR 117          
The following BLAST results are available for this feature:
BLAST of CX288700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
APX2_ARATH5.981e-3260.17L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_PEA5.598e-3057.63L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX2_ORYSJ3.396e-2753.39L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ8.365e-2650.85L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI8.365e-2650.85L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ARATH2.975e-2347.46L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX3_ORYSJ5.807e-1944.92Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI5.807e-1944.92Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ9.904e-1944.92Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH7.098e-1742.37L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC02003D06SK IF1 Citrus clementina cDNA clone C02003D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288700 ID=CX288700; Name=CX288700; organism=Citrus clementina; type=EST; length=580bp
TGGGAATGTACAAAAGCTACAGCTATGTTTTACAGATGAACTTTTGCAAC
AAGAAATCAATTCTAATTTAGAGAACATGCATATGAAAAGCCCTCACCGG
TCTTCCAGGGTGGAAAGGTATTTCAGGCCCTCCGGTAACTTCAACGGCAA
CAACTCCAGCCAACTTCAAGAAAATAAAACACAAACCATGGTCAATTCAC
CAATCCAAAGTAATCCATAGAAAGTGATCATAAAGCAAATCATTTTCTGT
AGTCAACAGTTGGATATAAATAATAATTACCTGATAGAAATCAGCGTAGG
ACAAGATAGGAAACTGCTGCTTGATGGGCTCCAAGAGCCTGACAGCAATA
TCAAGACCATTGTTAGCCTCATGAGCAAGCTCATCTGGGTGCCTGATCGT
CCCAAAAGGCCCTCCTGTCTTCGTGTTCACGTCATAAGTCCCCGCTGAGT
GCCATCTGCATATGTGCAGCCCACAAACTTACATATATATATATATATAT
ACACATCTTGATTGTGATCTAATACTCATCATCATGCAGATTAATAACGC
ATCAACGATGGTCACTGAAAGTGATCTTAA
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