CX288701

Overview
NameCX288701
Unique NameCX288701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:30..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288701 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.232e-23
Identity = 45/97 (46.39%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  220 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGXDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFN 510
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG D+W+FD+DET L NLPYY+ + +G++ ++   F+
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFD 137          
BLAST of CX288701 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.037e-20
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  223 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGXDIWVFDIDETSLCNLPYYAKNGFGVKPYNP 498
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDP 143          
BLAST of CX288701 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.335e-19
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  214 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGXDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFN 510
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +     D +VF ID T L N+PYY K+G+GV+ +N T+++
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYD 134          
BLAST of CX288701 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.335e-19
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  223 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGXDIWVFDIDETSLCNLPYYAKNGFGVKPYNP 498
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAP 148          
BLAST of CX288701 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.335e-19
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  214 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGXDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFN 510
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +     D +VF ID T L N+PYY K+G+GV+ +N T+++
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYD 131          
BLAST of CX288701 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.451e-16
Identity = 40/106 (37.74%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  193 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGXDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFN 510
            G R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYD 135          
The following BLAST results are available for this feature:
BLAST of CX288701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC2.232e-2346.39Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSP2_ARATH1.037e-2046.24Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSPA_SOYBN3.335e-1942.42Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
VSP1_ARATH3.335e-1945.16Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
S25K_SOYBN3.335e-1942.42Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN3.451e-1637.74Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
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Properties
Property NameValue
Genbank descriptionC02003D07SK IF1 Citrus clementina cDNA clone C02003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288701 ID=CX288701; Name=CX288701; organism=Citrus clementina; type=EST; length=512bp
AATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACTGCCATTATTTTT
CTTTTTTCTGGCTACCATATCAGCAACATCCCATGGATTTAGCATGGACA
TCCGCCATCTTTTTCTGGCTACCATACCAGCAACATCCCATGGATTTAGC
ATGGACATCCCCCATCAGATTCATCTTCTCCGACCGAAAGCCGGTTCCCG
GAACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCGACTCGGAGTGG
AAACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGAC
TACGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTGGACTCTGAAGT
GGTTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCACGCTTGCTGGCG
ACGGCNAGGACATTTGGGTTTTCGACATAGATGAAACCTCGCTATGTAAT
TTGCCATATTATGCTAAGAATGGATTCGGGGTGAAGCCGTACAACCCTAC
TATGTTTAATGA
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