CX288703

Overview
NameCX288703
Unique NameCX288703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15267 contig Ccv1_Contig15267:56..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.547e-17
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434
            +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LS +R                Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K
Sbjct:   37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 147          
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.020e-17
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434
            +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LS +R                Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K
Sbjct:   37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 147          
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.020e-17
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434
            +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LS +R                Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K
Sbjct:   37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 147          
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434
            +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LS +R                Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K
Sbjct:   37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTK 147          
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.212e-15
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  105 GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434
            G L   ++ LL TEKQ R + D   T K    I++LC+EA     +NE++V LS +RG               Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K
Sbjct:   39 GKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTK 148          
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.944e-14
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  108 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARL 428
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L  K G               Y+    DL T+I LI TL +++ GKIYVE+ERARL
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARL 133          
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYI--DQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434
            + +  + +DQLL  EK+ R + D+A +K+ +  I+ L      W  LNEQ+  LS K G               Y+   ++ DL+TRI +I T+  V+  KI+VE+ERAR+ K
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTK 141          
The following BLAST results are available for this feature:
BLAST of CX288703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_BOVIN1.547e-1739.6426S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_PONAB2.020e-1738.7426S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN2.020e-1738.7426S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE1.003e-1637.8426S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI4.212e-1540.9126S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_SCHPO7.944e-1439.2526S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
RPN5_YEAST3.690e-1134.5126S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionC02003D10SK IF1 Citrus clementina cDNA clone C02003D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288703 ID=CX288703; Name=CX288703; organism=Citrus clementina; type=EST; length=438bp
ATCCCTCTCTGAACTCACTCTCTGAAAATTAGGGTTTTTTCCCCCTTATT
TAACAATTTTGGGCATAATCTCCGGCGATTATCANATCGAACATGGAGGG
TAAAGGCAATTTGGAGGCGCAAGTAGATCAGCTTTTGAATACCGAGAAGC
AGATGAGATTATCCGGTGACGTGGCCGGCACCAAGAAGGCGGTGACGGAN
ATTTTGCAGCTTTGCTTTGAAGCTAAAGACTGGAAGACTCTCAATGAACA
GATTGTTAATCTTTCCTAGAAACGCGGTCAACTCANGCAGGCTGTAACTG
CAATGGTCCAGCAAGCAATGCAGTACATCGATCAGACGCCAGATCTTGAT
ACTCGTATAGAGCTCATCANAACACTAAATAGTGTCTCTGCAGGGAAGAT
ATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAAAC
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