CX288703
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 1.547e-17 Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434 +G L+ ++ LL+ EKQ R + D+ T + + I+++C+EAK+W LNE I+ LS +R Y+++ DL ++ LI TL V+ GKIYVEIERARL K Sbjct: 37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 147
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 2.020e-17 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434 +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LS +R Y+++ DL ++ LI TL V+ GKIYVEIERARL K Sbjct: 37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 147
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 2.020e-17 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434 +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W LNE I+ LS +R Y+++ DL ++ LI TL V+ GKIYVEIERARL K Sbjct: 37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 147
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16 Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3 Query: 102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434 +G L+ ++ LL+ EKQ R + D+ T + + ++++C+EAK+W NE I+ LS +R Y+++ DL ++ LI TL V+ GKIYVEIERARL K Sbjct: 37 EGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTK 147
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.212e-15 Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3 Query: 105 GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434 G L ++ LL TEKQ R + D T K I++LC+EA +NE++V LS +RG Y+DQ D+ ++ELI TL ++S GKI+VE ERARL K Sbjct: 39 GKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTK 148
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.944e-14 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 3 Query: 108 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYIDQTPDLDTRIELIXTLNSVSAGKIYVEIERARL 428 +++A +++LL EKQ+R + D + K + I L F A D++ LNEQ+V+L K G Y+ DL T+I LI TL +++ GKIYVE+ERARL Sbjct: 27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARL 133
BLAST of CX288703 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11 Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 3 Query: 102 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTXILQLCFEAKDWKTLNEQIVNLS*KRGXXXXXXXXXXXXXXXYI--DQTPDLDTRIELIXTLNSVSAGKIYVEIERARLIK 434 + + + +DQLL EK+ R + D+A +K+ + I+ L W LNEQ+ LS K G Y+ ++ DL+TRI +I T+ V+ KI+VE+ERAR+ K Sbjct: 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTK 141 The following BLAST results are available for this feature:
BLAST of CX288703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288703 ID=CX288703; Name=CX288703; organism=Citrus clementina; type=EST; length=438bpback to top |