CX288704

Overview
NameCX288704
Unique NameCX288704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 7.455e-46
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G KG + F QEGDGPTT+ G++  L  G HGFH+H  GD  + C STG H+NP  K+HG PED  RHAGDLGN+  G DG A IN+ D    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.169e-45
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G KG ++F QEGDGPTT+ G++  L  G HGFH+H  GD  + C STG HFNP   +HG PED  RHAGDLGN+ VG DG   +NIVD    IPL G NSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQ--IPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.700e-45
Identity = 88/152 (57.89%), Postives = 105/152 (69.08%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G KG + F QEGDGPT + G++  L  G HGFH+H  GD  + C STG H+NP  K+HG PED  RHAGDLGN+  G DG A IN+ D    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.832e-45
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAV  + S    KG +HF QEGDGPTT+ G++  L  G HGFHIH  GD  + C STG H+NP  K+HG PED  RHAGDLGN+  G DG A I++VD    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.832e-45
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAV  + S    KG +HF QEGDGPTT+ G++  L  G HGFHIH  GD  + C STG H+NP  K+HG PED  RHAGDLGN+  G DG A I++VD    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.242e-45
Identity = 88/152 (57.89%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G + F Q  DGPTT+ G +  L  G HGFH+H  GD  + C STG HFNP  K+HG PED IRHAGDLGN+ VG DGK   +I+D    IPL GPNSI+GR+VV+H   DDLGK G+  SK  GNAG ++ACGVIGLQ
Sbjct:    2 VKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQ--IPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.398e-44
Identity = 87/152 (57.24%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAV  +    G  G++HF QE DGPTT+ G L  L+ G HGFH+H  GD  + C STG H+NP  K+HG PED  RHAGDLGN+ VG DG A+  IVDK   IPL+G  SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG IGLQ
Sbjct:    2 VKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQ--IPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.132e-44
Identity = 85/151 (56.29%), Postives = 105/151 (69.54%), Query Frame = 3
Query:   90 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            KAV  + S  G  G ++F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K+HG PED +RHAGDLGNI VG DG A   I+D    IPL GPNSI+GR+VV+H + DDLG+ G+  SK  GNAG ++ACG+IGLQ
Sbjct:    3 KAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQ--IPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.343e-44
Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VK VA + S  G  G ++F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG HFNP  K+HG P+D +RHAGDLGN+ VG DG A   IVDK   IPL GP+SIIGR+VV+H   DDLGK G+  SK  GN G ++ACG+ GLQ
Sbjct:    2 VKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQ--IPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQ 151          
BLAST of CX288704 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.343e-44
Identity = 86/152 (56.58%), Postives = 103/152 (67.76%), Query Frame = 3
Query:   87 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKDHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 542
            VKAVA + S  G  G + F Q+GD PTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K+HG PED +RHAGDLGNI VG DG A   + DK   IPL GP SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQ--IPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
The following BLAST results are available for this feature:
BLAST of CX288704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC4_MAIZE7.455e-4658.55Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_ANACO2.169e-4558.55Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC5_MAIZE3.700e-4557.89Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC1_ORYSJ4.832e-4558.55Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI4.832e-4558.55Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_CARPA8.242e-4557.89Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_PANGI2.398e-4457.24Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_SPIOL3.132e-4456.29Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PAUKA5.343e-4456.58Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_NICPL5.343e-4456.58Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]

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Properties
Property NameValue
Genbank descriptionC02003D12SK IF1 Citrus clementina cDNA clone C02003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288704 ID=CX288704; Name=CX288704; organism=Citrus clementina; type=EST; length=589bp
AGAGAACGGCTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGT
TTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTTGC
TTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACAGG
AAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGCAG
GGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTCTG
CCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAAGATCATGGTGGCC
CAGAGGATTGGATTCGTCACGCCGGTGATTTAGGAAATATCTATGTTGGT
TTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATTCC
TCTTGTTGGGCCAAATTCCATTATCGGAAGGTCTGTCGTGATACACGATA
AGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATGGA
AATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGAAT
GGTCTCGGTTTGGACTCTATATGATAAATACTTTACCTG
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