CX288706

Overview
NameCX288706
Unique NameCX288706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig144 contig Ccv1_Contig144:1..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288706 vs. ExPASy Swiss-Prot
Match: VPS45_ARATH (Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 1.073e-80
Identity = 145/164 (88.41%), Postives = 160/164 (97.56%), Query Frame = 1
Query:    1 FEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI 492
            +EAVT+LLNNE+VSDIDRLRLVMLYALRYEK++PVQLMQLFNKLASRS KYKPGLVQFLLKQAGV+KRTGDL+GNRD +NIARNMARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPFVG+HFQQGRPQ+V+IF+VGGTTYEESRSVAL+NA NSG+RFI
Sbjct:  376 YEAVTDLLNNESVSDIDRLRLVMLYALRYEKENPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVEKRTGDLFGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTTYEESRSVALQNATNSGVRFI 539          
BLAST of CX288706 vs. ExPASy Swiss-Prot
Match: VPS45_MOUSE (Vacuolar protein sorting-associated protein 45 OS=Mus musculus GN=Vps45 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31
Identity = 72/163 (44.17%), Postives = 102/163 (62.58%), Query Frame = 1
Query:   10 VTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSA--KYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI 492
            V  LL N  V++ D +RLVMLYAL YE+ S   L  L   L S+    KY+  LV  +++  G   R  DL+  +D + I +   +GLKGVENVYTQHQP L +T++ +IKGRL++  YP++G    + RPQD+I+FI+GG TYEE+ +V   N    G+R +
Sbjct:  370 VKRLLQNPKVTEFDAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRK-LVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIV 531          
BLAST of CX288706 vs. ExPASy Swiss-Prot
Match: VPS45_HUMAN (Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 1
Query:   10 VTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASR--SAKYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI 492
            +  LL N  V++ D  RLVMLYAL YE+ S   L  L   L ++  S KY+  LV  +++  G   R  DL+  +D + I +   +GLKGVENVYTQHQP L +T++ +IKGRL++  YP++G    + RPQD+I+F++GG TYEE+ +V   N    G+R +
Sbjct:  370 IKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRK-LVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIV 531          
BLAST of CX288706 vs. ExPASy Swiss-Prot
Match: VPS45_RAT (Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus GN=Vps45 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 1
Query:   10 VTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSA--KYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI 492
            V  LL N  V++ D +RLVMLYAL YE+ S   L  L   L S+    KY+  LV  +++  G   R  DL+  +D + I +   +GLKGVENVYTQHQP L +T++ +IKG+L++  YP++G    + RPQD+I+F++GG TYEE+ +V   N    G+R +
Sbjct:  370 VKRLLQNPKVTEFDAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRK-LVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIV 531          
BLAST of CX288706 vs. ExPASy Swiss-Prot
Match: VPS45_DICDI (Vacuolar protein sorting-associated protein 45 OS=Dictyostelium discoideum GN=vps45 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.774e-28
Identity = 67/163 (41.10%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    1 FEAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKP-GLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMA-RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGI 483
            +  V  ++N+   +D D+L LV+LY++RYE     ++ +L  KL+S     K  GL+  L   AG   R GDL G ++  + AR++  RGL+GV N+YTQH+PLL   ++SI+K +L++  YP++     + RPQDVIIF+VGG TYEE+ +V   N+ N+G+
Sbjct:  369 YNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDG---RVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGV 528          
BLAST of CX288706 vs. ExPASy Swiss-Prot
Match: YAB3_SCHPO (Putative vacuolar protein sorting-associated protein C2G11.03c OS=Schizosaccharomyces pombe GN=SPAC2G11.03c PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 59/158 (37.34%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   34 NVSDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAK-YKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNHFQ----QGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFI 492
            N+S+  +LRL  LY+LR+E+  P ++  L   L +      K  ++  LL  AG   R GD++   +  + AR+  +GL+GVENVY QH P L   +  +I+GRL++  +PF+ +  +      +PQD+I+ IVGG TYEE+  V+  NA   G+R I
Sbjct:  377 NISENTKLRLAALYSLRFERIDPAKVSALQQMLIAGGVNPLKVSVIPTLLHVAGYSFRQGDVFPPSNLFSRARSGLKGLRGVENVYIQHNPFLKSILLDLIQGRLKETTHPFLNSETRAQTSNEKPQDIIVVIVGGATYEEAHFVSEFNATQPGVRII 534          
The following BLAST results are available for this feature:
BLAST of CX288706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS45_ARATH1.073e-8088.41Vacuolar protein sorting-associated protein 45 hom... [more]
VPS45_MOUSE2.681e-3144.17Vacuolar protein sorting-associated protein 45 OS=... [more]
VPS45_HUMAN5.972e-3142.94Vacuolar protein sorting-associated protein 45 OS=... [more]
VPS45_RAT7.799e-3142.94Vacuolar protein sorting-associated protein 45 OS=... [more]
VPS45_DICDI2.774e-2841.10Vacuolar protein sorting-associated protein 45 OS=... [more]
YAB3_SCHPO2.687e-2337.34Putative vacuolar protein sorting-associated prote... [more]
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Properties
Property NameValue
Genbank descriptionC02003E02SK IF1 Citrus clementina cDNA clone C02003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288706 ID=CX288706; Name=CX288706; organism=Citrus clementina; type=EST; length=493bp
TTTGAGGCAGTGACAAATCTTTTGAACAATGAAAATGTATCTGACATTGA
CCGTCTGCGCCTGGTTATGTTGTATGCTTTGCGCTATGAGAAGGATAGCC
CAGTTCAGTTAATGCAGCTTTTCAACAAGCTAGCTTCTCGGTCTGCGAAG
TACAAGCCTGGGCTGGTGCAGTTCCTCTTGAAGCAAGCAGGTGTAGACAA
GCGAACCGGGGATCTGTATGGAAATCGAGATTTTATGAATATTGCTCGGA
ACATGGCCCGTGGTTTGAAGGGGGTTGAGAATGTCTATACTCAACATCAG
CCTCTTCTGTTTCAAACCATGGAGAGCATAATCAAGGGACGGTTGCGGGA
TGTGGACTACCCGTTTGTTGGAAATCACTTTCAGCAGGGCAGGCCACAGG
ATGTGATTATTTTCATTGTTGGTGGGACAACATATGAGGAGTCACGTTCC
GTCGCCCTAGAAAATGCCAATAACTCTGGTATTCGTTTTATAC
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