CX288707

Overview
NameCX288707
Unique NameCX288707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.456e-60
Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN FLQD KFP+P   ++F+ L  A++FSKFDLKSGFWQLGI P+ER KT FCIP+ H+QW V+PFGLKTAPS+FQK+M+KIF PIL  AL+YID+ILLFS +  +H +LL QF  +V+  G+MLSAKK  +A + I+FLGM   D  + P  HI+ EL  FPD  LS KQ+QQFLGI+NY
Sbjct: 1449 LNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNY 1629          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.456e-60
Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN FLQD KFP+P   ++F+ L  A++FSKFDLKSGFWQLGI P+ER KT FCIP+ H+QW V+PFGLKTAPS+FQK+M+KIF PIL  AL+YID+ILLFS +  +H +LL QF  +V+  G+MLSAKK  +A + I+FLGM   D  + P  HI+ EL  FPD  LS KQ+QQFLGI+NY
Sbjct: 1448 LNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNY 1628          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34
Identity = 69/170 (40.59%), Postives = 102/170 (60.00%), Query Frame = 1
Query:   34 LPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LP  Q + T L+   IFS FD KSGFWQ+ +    +  TAF  P  H+QW V+PFGLK APSIFQ+ M    +      ++Y+D+I++FS S  +H+  +     IV+ +GI+LS KK+ +  + I FLG+ I    + P  HI + +  FPD+   KK +Q+FLG++ Y
Sbjct:  313 LPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTY 482          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1
Query:   28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            + LP    + T ++  +IFS FD KSGFWQ+ +    R  TAF  P  HY+W V+PFGLK APSIFQ+ M + F        +Y+D+IL+FS +  +H   +         HGI+LS KK+ +    I FLG+ I +  ++P  HI + +  FPD    KKQ+Q+FLGI+ Y
Sbjct:  318 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 489          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1
Query:   28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            + LP    + T ++  +IFS FD KSGFWQ+ +    R  TAF  P  HY+W V+PFGLK APSIFQ+ M + F        +Y+D+IL+FS +  +H   +         HGI+LS KK+ +    I FLG+ I +  ++P  HI + +  FPD    KKQ+Q+FLGI+ Y
Sbjct:  318 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 489          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1
Query:   28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            + LP    + T ++  +IFS FD KSGFWQ+ +    R  TAF  P  HY+W V+PFGLK APSIFQ+ M + F        +Y+D+IL+FS +  +H   +         HGI+LS KK+ +    I FLG+ I +  ++P  HI + +  FPD    KKQ+Q+FLGI+ Y
Sbjct:  318 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 489          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.477e-34
Identity = 69/172 (40.12%), Postives = 100/172 (58.14%), Query Frame = 1
Query:   28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            + LP    + T ++  +IFS FD KSGFWQ+ +    R  TAF  P  HY+W V+PFGLK APSIFQ+ M + F        +Y+D+I++FS +  +H   +         HGI+LS KK+ +    I FLG+ I +  ++P  HI + +  FPD    KKQ+Q+FLGI+ Y
Sbjct:  319 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 490          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.617e-33
Identity = 69/169 (40.83%), Postives = 98/169 (57.99%), Query Frame = 1
Query:   37 PR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            P    + T ++  +IFS FD KSGFWQ+ +    R  TAF  P  HY+W V+PFGLK APSIFQ+ M + F        +Y+D+IL+FS +  +H   +         HGI+LS KK+ +    I FLG+ I +  ++P  HI + +  FPD    KKQ+Q+FLGI+ Y
Sbjct:  316 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 484          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CYLCV (Enzymatic polyprotein OS=Cestrum yellow leaf curling virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 75/175 (42.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   34 LPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAF-CIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHH-QLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDD---HYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LPR  S+ T +K +  FS  D KSG+WQL + P  +  TAF C P  HYQW VLPFGLK AP I+Q  M K    + +  L YID+IL+F+ S  E H   L    +  +  G++LS KK+ IA  TI+FLG+ ++++     QP  ++ ++L  FPD    +KQ+Q+FLG +NY
Sbjct:  276 LPRIDSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSCPPQKHYQWNVLPFGLKQAPGIYQNFMDKNLEGLENFCLAYIDDILVFTNSSREEHLSKLLVVLERCKEKGLILSKKKAIIARQTIDFLGLTLQENGEIKLQP--NVLEKLELFPDAIEDRKQLQRFLGCLNY 448          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.028e-29
Identity = 70/181 (38.67%), Postives = 105/181 (58.01%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN       FPLPR  ++ + + NAQIF+  DL SG+ Q+ ++P +RYKTAF  P+  Y++TV+PFGL  APS F + M   F   L    +Y+D+IL+FS S  EH + L    + +++  +++  KK   A++  EFLG  I      P +H    +  FP  + + KQ Q+FLG+INY
Sbjct:  681 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD-LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPK-TVKQAQRFLGMINY 859          
The following BLAST results are available for this feature:
BLAST of CX288707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
POLG_PVCV23.456e-6060.77Genome polyprotein OS=Petunia vein clearing virus ... [more]
POLG_PVCV13.456e-6060.77Genome polyprotein OS=Petunia vein clearing virus ... [more]
POL_FMVD3.257e-3440.59Enzymatic polyprotein OS=Figwort mosaic virus (str... [more]
POL_CAMVS4.254e-3440.70Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVE4.254e-3440.70Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC4.254e-3440.70Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVN9.477e-3440.12Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVD1.617e-3340.83Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CYLCV1.673e-3042.86Enzymatic polyprotein OS=Cestrum yellow leaf curli... [more]
YI31B_YEAST7.028e-2938.67Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC02003E03SK IF1 Citrus clementina cDNA clone C02003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288707 ID=CX288707; Name=CX288707; organism=Citrus clementina; type=EST; length=544bp
CTAAATATGTTTTTGCAAGATCACAAATTTCCTTTGCCCCGATGACAAAG
CATGTTTACTTTTCTAAAAAATGCCCAGATCTTTTCCAAATTTGATTTAA
AATCAGGTTTTTGGCAATTAGGCATTAAACCCTCGGAGCGTTACAAAACT
GCTTTTTGTATCCCAAATGCCCATTATCAATGGACAGTCCTTCCCTTCGG
CCTCAAAACTGCCCCATCCATTTTTCAAAAATCCATGGTCAAAATCTTTC
ACCCTATCCTGCATCATGCATTAATTTACATTGATAATATCTTGCTTTTT
TCAGGGTCACATGCTGAACATCACCAGTTGTTAACTCAATTCTATGATAT
TGTTCAAAGTCATGGAATCATGCTGTCTGCCAAGAAAAGCACCATTGCCA
CGGATACCATTGAATTCCTTGGTATGATCATAAAGGACGACCATTATCAG
CCAGGAAAGCACATTGCCCAAGAGTTGCTTCACTTTCCAGATCAGCAACT
TTCCAAAAAGCAAGTTCAACAGTTTCTAGGCATTATCAATTACA
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