CX288709

Overview
NameCX288709
Unique NameCX288709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288709 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.089e-21
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   15 AIEAFCGKSSSYATKEVALVLKALYDSXVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSA 212
            AIE FC K +S A KEVALVLK LYD+ VLEEE IV WYQ+GLKG +KNS+IWKNA+PFI+WLQ+A
Sbjct:  371 AIEEFCCKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNA 436          
BLAST of CX288709 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.175e-18
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   15 AIEAFCGKSSSY-ATKEVALVLKALYDSXVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSA 212
            +I  FCGK+ +  A KEVALVLKALYD  ++EEE ++ WY++GL G  K+S +WKN KPF+EWLQSA
Sbjct:  363 SIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSA 429          
BLAST of CX288709 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.137e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   15 AIEAFCGKSSSYATKEVALVLKALYDSXVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSA 212
            AIEAF GK +  A KEV +VLKALYD  +L+EE IV WY + +  G K+SQ+ KNAKPF+EWLQSA
Sbjct:  378 AIEAFGGKCNPEALKEVPVVLKALYDGDILDEETIVDWYNDAVAAG-KDSQVVKNAKPFVEWLQSA 442          
BLAST of CX288709 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.777e-14
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   18 IEAFCGKSSSYATKEVALVLKALYDSXVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSA 212
            IE+FC K+S+ A KEVALV+K LYD  +L+E+ IV+WY +G+    K+S + KN  PFIEWLQ+A
Sbjct:  372 IESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNA 432          
The following BLAST results are available for this feature:
BLAST of CX288709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IF5_PHAVU3.089e-2172.73Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5Z_ARATH4.175e-1859.70Probable eukaryotic translation initiation factor ... [more]
IF5_MAIZE1.137e-1562.12Eukaryotic translation initiation factor 5 OS=Zea ... [more]
IF5Y_ARATH4.777e-1455.38Probable eukaryotic translation initiation factor ... [more]
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Properties
Property NameValue
Genbank descriptionC02003E05SK IF1 Citrus clementina cDNA clone C02003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288709 ID=CX288709; Name=CX288709; organism=Citrus clementina; type=EST; length=440bp
ATCGGCACGAGGGAGCAATTGAGGCATTCTGTGGGAAGTCAAGCTCATAT
GCGACAAAGGAAGTGGCTTTGGTTCTGAAGGCTCTGTATGACTCTNATGT
GTTGGAGGAAGAGTATATAGTGCAATGGTATCAAGAGGGGCTGAAAGGAG
GCAGCAAAAACTCCCAGATTTGGAAAAATGCCAAGCCTTTTATCGAGTGG
CTTCAGAGTGCTGAGTCGGAATCTGAAGAGTAATGAGTGAATTTTTCTTT
TTTGCAGGATCCTGTTTTGCCATTTGGTGGAGTGAATAAAGAGACAGTTT
GGTGGTTTTATTCTAGTTATTACTGCAAACTGGTGTGAATAAAGAGTCTT
GTTTGGTTGTTTTATTCTAGCGACTACTATAAACTTTTGACAGTGTGTGT
TGTTTTATTCTAGTCATTACTGCAAAGTTGATTGTGTGTA
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