CX288722

Overview
NameCX288722
Unique NameCX288722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig921 contig Ccv1_Contig921:22..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.934e-57
Identity = 107/183 (58.47%), Postives = 134/183 (73.22%), Query Frame = 3
Query:   12 SLLVPSVQELA-ENPMVAVPPRYIRPEQDAPVISDNTLIS-KFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 554
            S+LVPSVQE+  E  +  VPPRY+R +QD   + D+  +  + P+IDM+              LDFAC+EWGFFQLVNHG+  + +DKVK EIQ+FFNL MEEKKK+WQ P E+EGFGQAFVVSE+Q+LDW DLFF T  PV LRKPHLFPKLP   RDTLE+YS+EV ++A  LI++MA+ L
Sbjct:   11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARAL 193          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 83/185 (44.86%), Postives = 110/185 (59.46%), Query Frame = 3
Query:    6 GGSLLVPSVQELAENPMVAVPPRYIRPE--QDAPVISDNTLISKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 554
            GGSL V +VQ LA   +  +P RY+RPE   D  V  DN+L  + PVID+             A    AC +WGFFQL+NHGV   +++K+K + ++FF L  +EK  Y Q P  +EG+GQAFV SEEQ+LDW D+ F+ T PV  R    +P  P S R+T+E YS E+  +AM L   MAK L
Sbjct:    9 GGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNL 191          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.403e-19
Identity = 56/182 (30.77%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   24 PSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK-------FPVIDMQXXXXXXXXXXXXAN--LDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLIS 536
            P V+ELA + +  +P  Y+RPE++   I  N L  +        P ID++             +  L  A  +WG   L+NHG+   L+D+VK   +EFF L +EEK+ Y   Q  G V+G+G     +   +L+W D FF    P H     ++P  PP        Y+ ++ ALA  ++S
Sbjct:   10 PRVEELARSGLDTIPKDYVRPEEELKSIIGNILAEEKSSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILS 191          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 55/185 (29.73%), Postives = 93/185 (50.27%), Query Frame = 3
Query:   21 VPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXXXXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMA 545
            V  V+ LA++ ++++P  YIRP+++   I+D  L  K       P ID++                L  A  +WG   L+NHG+   L+++VKK  +EFF+LS+EEK+KY   Q  G+++G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  +  LA  +   ++
Sbjct:    4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALS 188          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 56/187 (29.95%), Postives = 88/187 (47.06%), Query Frame = 3
Query:   18 LVPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXXXXAN------LDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLIS 536
            + P V+ L+ + + ++P  YIRP+++   I +     K       P ID++                    L  A  EWG   LVNHG+S  L+++VK   + FFNL MEEK+KY   Q  G++ G+G     +   +L+W D FF    P   R   ++PK P         YS ++ +LA  ++S
Sbjct:    5 VAPRVESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILS 191          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 3
Query:   30 VQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXXXXAN-LDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLIS 536
            V+ LA++ + A+P  Y+RP+++   I +     K       P ID++             + L  A  EWG   LVNHG+S  L+++VK   + FF+  +EEK+KY   Q  G V+G+G     S   +L+W D FF    P   R   ++PK P         Y+ ++ ALA  +++
Sbjct:   12 VESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILT 189          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 52/178 (29.21%), Postives = 86/178 (48.31%), Query Frame = 3
Query:   30 VQELAENPMVAVPPRYIRPEQDAPVISD------NTLISKFPVIDMQXXXXXXXXXXXXAN--LDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLI 533
            V+ LA + +  +P  YIRP+ +   I D      N    + P ID++                L  A  +WG   LVNHG+S  L+DKV+K  + FF+L +E+K+KY   Q  G+++G+G     +   +L+W D FF    P   R   ++P+ P    +    Y+ ++  LA  ++
Sbjct:   11 VETLAGSGISTIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVL 188          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3
Query:   75 YIRPEQDAPVISDNTLISKFPVIDMQXXXXXXXXXXXXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 554
            ++R E + P ++ N   ++ P+I +                 +  AC +WG FQ+V+HG+   L+ ++ +  +EFF L  EEK +Y    G+  GF  + V+  +  +DW +     + P++ R    +PK P   R T EVYS ++  L   L+  +++ +
Sbjct:   19 FVRDEDERPKVAYNQFSNEIPIISLAGLDDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAM 180          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 3
Query:   21 VPSVQELAENPMV--AVPPRYIRPEQDAPVISD-NTLISKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPG--EVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMA 545
            V  VQE+A    V   +P  YIR E + PVIS  + ++ + PVID+               +  A +EWG FQ+VNHG+   ++ K+++  + FF L  EEK+   +  G   +EG+G       + +  W D  F    P        +PK PP+ R+  E Y+  +  +  NL   ++
Sbjct:    3 VQRVQEIASLSKVIDTIPAEYIRSENEQPVISTVHGVVLEVPVIDLSDSDEKKIVGL----VSEASKEWGIFQVVNHGIPNEVIRKLQEVGKHFFELPQEEKELIAKPEGSQSIEGYGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANEEYAKRLQLVVDNLFKYLS 178          
BLAST of CX288722 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 43/163 (26.38%), Postives = 79/163 (48.47%), Query Frame = 3
Query:   72 RYIRPEQDAPVISDNTLISKFPVIDMQXXXXXXXXXXXXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 554
            +++R E + P I+ N    + PVI +                 +  AC +WG FQ+V+HG+ + L+ ++ +  ++FF L  EEK ++    G+  GF  +  +  E   DW ++    + P+  R    +P  P   R   E+YS E+ ALA  L+  +++ +
Sbjct:   18 KFVRDEDERPKIAYNKFSDEIPVISLAGIDDDSVDKRSQICRKIVEACEDWGIFQVVDHGIDIDLISEMTRLARQFFALPAEEKLRFDMTGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIQARDYSRWPDKPEGWRSITEMYSDELMALACKLLEVLSEAM 180          
The following BLAST results are available for this feature:
BLAST of CX288722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SRG1_ARATH4.934e-5758.47Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA7.407e-3744.86S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_PERFR1.403e-1930.77Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_ARATH9.097e-1929.73Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_VITVI6.519e-1729.95Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_PETHY2.477e-1630.34Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
LDOX_MALDO9.413e-1629.21Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
FNSI_PETCR3.577e-1526.54Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
FLS_EUSGR3.028e-1429.44Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
FL3H_PETCR8.811e-1426.38Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02003F07SK IF1 Citrus clementina cDNA clone C02003F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288722 ID=CX288722; Name=CX288722; organism=Citrus clementina; type=EST; length=558bp
AGTACGGAGGTTCTTTGCTTGTTCCTTCTGTTCAAGAATTAGCCGAGAAT
CCTATGGTAGCTGTTCCTCCCAGATACATACGTCCTGAGCAAGATGCACC
TGTCATTTCTGACAATACTTTGATCTCAAAGTTTCCAGTTATTGACATGC
AGAGCTTGCTTTCTGAAGAATCAGTGGATTCTGAATTGGCCAACCTTGAC
TTCGCTTGCAGAGAATGGGGTTTTTTCCAGTTGGTCAATCATGGAGTGAG
TTTGGCGTTAGTAGACAAAGTGAAGAAAGAGATACAGGAATTCTTCAATC
TCAGCATGGAAGAGAAGAAAAAATATTGGCAGTATCCCGGAGAAGTAGAA
GGATTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAGGCTTGACTGGGG
AGACCTGTTCTTCATGACCACTCTTCCTGTCCATCTGAGGAAACCCCACT
TGTTTCCTAAGCTCCCTCCTTCTCTCAGGGATACGTTGGAAGTTTACTCA
ACGGAAGTAAATGCTCTAGCGATGAATTTAATATCGAGAATGGCAAAAGT
CTTACATA
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