CX288739

Overview
NameCX288739
Unique NameCX288739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288739 vs. ExPASy Swiss-Prot
Match: FLA21_ARATH (Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana GN=FLA21 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.977e-12
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  295 VASSSPLLDRIVRLHILPQRFTYKELASLPGKTLLKTLVPNQYLVI------SGGADFIQGFDINGVHIFAPEILSSKQFVIHGIS 534
            ++S+SP L  +VR HIL QR TYK+ AS+  K  +KTL P Q L I      S G DF+    I+GV I  P++ SS  FVIHGIS
Sbjct:  264 LSSASPFLYEVVRHHILVQRLTYKDFASMSDKATVKTLDPYQDLTITRRNVNSSGGDFM----ISGVEIVDPDMFSSSNFVIHGIS 345          
The following BLAST results are available for this feature:
BLAST of CX288739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FLA21_ARATH5.977e-1248.84Fasciclin-like arabinogalactan protein 21 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC02003H03SK IF1 Citrus clementina cDNA clone C02003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288739 ID=CX288739; Name=CX288739; organism=Citrus clementina; type=EST; length=545bp
GGGCTACTGAGTGGCAAATCCTGCACCATTACCTCANACTTCAAAGGATT
GTATACACTATATTACAAACAAAGCTGAATGGTTAATACACTTGAGGGTT
ACACGTGCCAAAGCCTTTACCATTAAAACAAATTAATAGCAACTGAAATA
GTCCTGGAGCACAGAAGAATTAACTGGCTAAACTGAAAACTTGTAAACAC
TGCTAAGCATCAGTATTGGACAATACTCTATAGCTAATGTTAAATCATGC
CAATTTTGATGTTGTCAGGAAGTCCTACTATCTCGAAAAGCTTGAGAAAT
TCCATGAATCACAAACTGCTTGGACGATAATATTTCAGGGGCAAAAATAT
GCACTCCATTGATGTCAAATCCTTGGATAAAATCAGCACCTCCACTGATC
ACGAGATATTGATTGGGTACTAACGTCTTTAGTAATGTTTTACCGGGTAA
AGAAGCCAGTTCTTTATACGTAAATCTTTGAGGCAATATATGGAGCCTCA
CGATTCTGTCAAGCAAGGGAGAAGAAGATGCTACAACTGCAAAGT
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