CX288741

Overview
NameCX288741
Unique NameCX288741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig146 contig Ccv1_Contig146:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 5.389e-90
Identity = 163/180 (90.56%), Postives = 173/180 (96.11%), Query Frame = 3
Query:    3 IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            IY VFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESS++TIRGPAEAAVDAVH+LLK+LVHKAISET +LKQYP LR EVG AA++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTT+LSYVNMVCA+LRNS
Sbjct:  360 IYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVHSLLKDLVHKAISETLDLKQYPGLRVEVGAAAVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTILSYVNMVCATLRNS 539          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 1.917e-87
Identity = 158/180 (87.78%), Postives = 172/180 (95.56%), Query Frame = 3
Query:    3 IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            IY VFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESS++TIRGPAE+AVDAVH+LLK+LVHKA+SET +LKQYP LR EVG A+++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSI DRYNDSYLRRIGTT+LSYVNMVCA+LR+S
Sbjct:  360 IYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSLITIRGPAESAVDAVHSLLKDLVHKAMSETLDLKQYPGLRVEVGAASVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSICDRYNDSYLRRIGTTILSYVNMVCATLRHS 539          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 319.316 bits (817), Expect = 7.284e-87
Identity = 155/180 (86.11%), Postives = 172/180 (95.56%), Query Frame = 3
Query:    3 IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            +Y VFDNQLPAALKRLQFDKQL+M+NIRKL+TEADGYQPHLIAPEQGYRRLIESS+V+IRGPAEA+VD VHA+LK+LVHK+++ET ELKQYPALR EV NAAIESL++MR+ SKKATLQLVDMECSYLTVDFFRKLPQDV+KGGNPTHSIFDRYNDSYLRRIG+ VLSYVNMVCA LRNS
Sbjct:  360 VYNVFDNQLPAALKRLQFDKQLAMDNIRKLVTEADGYQPHLIAPEQGYRRLIESSIVSIRGPAEASVDTVHAILKDLVHKSVNETVELKQYPALRVEVTNAAIESLDKMREGSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGSNVLSYVNMVCAGLRNS 539          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.471e-79
Identity = 142/177 (80.23%), Postives = 161/177 (90.96%), Query Frame = 3
Query:   12 VFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            VFDNQ PAA+KRLQFDK LSM+N+RKLITEADGYQPHLIAPEQGYRRLIES +V+IRGPAEAAVDAVH++LK+L+HK++ ET ELKQYP LR EV  AA++SL+RMRD S+KATL LVDME  YLTV+FFRKLPQD +KGGNPTHSIFDRYND+YLRRIG+ VLSYVNMVCA LRNS
Sbjct:  363 VFDNQFPAAIKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVSIRGPAEAAVDAVHSILKDLIHKSMGETSELKQYPTLRVEVSGAAVDSLDRMRDESRKATLLLVDMESGYLTVEFFRKLPQDSEKGGNPTHSIFDRYNDAYLRRIGSNVLSYVNMVCAGLRNS 539          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 7.855e-57
Identity = 107/188 (56.91%), Postives = 147/188 (78.19%), Query Frame = 3
Query:    3 IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDK--------GGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            IY VFDNQLPAALK+L FD+ LS+++++K+++EADGYQPHLIAPEQGYRRLIE ++   RGPAEA+VDAVH +LKELV K+ISET ELK++P+L+ E+  AA  SLE+ R+ SKK+ ++LVDME +YLT +FFRKLPQ++++          +P+ +  D+Y D + RRI + V +YVNMV  +LRN+
Sbjct:  366 IYGVFDNQLPAALKKLPFDRHLSLQSVKKIVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHYVLKELVRKSISETEELKRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNT 553          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 6.650e-56
Identity = 110/184 (59.78%), Postives = 145/184 (78.80%), Query Frame = 3
Query:    3 IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDK-GGNPTHS---IFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            IY VFD+QLPAALK+L FD+ LS +N++K+++EADGYQPHLIAPEQGYRRLI+ S+   +GPAEA VDAVH +LKELV K+ISET ELK++P L +++  AA E+LER RD S+K  L+LVDME SYLTV+FFRKL  + +K   NP ++     D Y+D++ R+IG+ V +Y+NMVC +LRNS
Sbjct:  361 IYGVFDHQLPAALKKLPFDRHLSTKNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEATVDAVHFVLKELVRKSISETEELKRFPTLASDIAAAANEALERFRDESRKTVLRLVDMESSYLTVEFFRKLHLEPEKEKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNS 544          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.754e-48
Identity = 96/182 (52.75%), Postives = 137/182 (75.27%), Query Frame = 3
Query:    3 IYYVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKG--GNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNS 542
            IY +FD  LP A+K+L FD+ LS+++++++++E+DGYQPHLIAPE GYRRLIE S+   RGPAEA+V+A+H +LKELV KAI+ET ELK++P+L+ E+  AA  SL++ R+ S K+ L+LVDME SYLTVDFFRKL  +       +PT +I D+Y D + R+I + V +Y+ MV  +L N+
Sbjct:  361 IYGIFDYNLPTAIKKLPFDRHLSLQSVKRIVSESDGYQPHLIAPELGYRRLIEGSLNHFRGPAEASVNAIHLILKELVRKAIAETEELKRFPSLQIELVAAANSSLDKFREESMKSVLRLVDMESSYLTVDFFRKLHVESQNMSLSSPTSAI-DQYGDGHFRKIASNVAAYIKMVAETLVNT 541          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 48/134 (35.82%), Postives = 82/134 (61.19%), Query Frame = 3
Query:   15 FDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQ 416
            F+   P  +K+L  D+   + N+++++ EADGYQP+LI+PE+G R LI++ +   + PA   VD VH +L ++V  + + TP L +YP  + EV   A  +L+  ++ +KK  + LVDME +++    F +L Q
Sbjct:  367 FEGNFPNRIKKLPLDRHFDLNNVKRIVLEADGYQPYLISPEKGLRSLIKTVLELAKDPARLCVDEVHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQ 500          
BLAST of CX288741 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 48/134 (35.82%), Postives = 81/134 (60.45%), Query Frame = 3
Query:   15 FDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSVVTIRGPAEAAVDAVHALLKELVHKAISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQ 416
            F+   P  +K+L  D+   + N+++++ EADGYQP+LI+PE+G R LI+  +   + PA   VD VH +L ++V  + + TP L +YP  + EV   A  +L+  ++ +KK  + LVDME +++    F +L Q
Sbjct:  367 FEGNFPNRIKQLPLDRHFDLNNVKRVVLEADGYQPYLISPEKGLRSLIKIVLELAKDPARLCVDEVHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQ 500          
The following BLAST results are available for this feature:
BLAST of CX288741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SDL5A_SOYBN5.389e-9090.56Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN1.917e-8787.78Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH7.284e-8786.11Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH1.471e-7980.23Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1E_ARATH7.855e-5756.91Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1C_ARATH6.650e-5659.78Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1D_ARATH1.754e-4852.75Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DRP2B_ARATH3.118e-2135.82Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
DRP2A_ARATH1.185e-2035.82Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02003H05SK IF1 Citrus clementina cDNA clone C02003H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288741 ID=CX288741; Name=CX288741; organism=Citrus clementina; type=EST; length=543bp
AAATTTACTATGTTTTTGATAACCAGCTTCCTGCTGCTCTAAAAAGGTTG
CAATTTGACAAGCAACTCTCCATGGAAAATATTCGGAAGCTCATTACTGA
AGCTGATGGATATCAGCCTCATTTGATTGCCCCTGAACAAGGATACCGTC
GTTTGATAGAATCATCTGTGGTTACCATCAGAGGTCCTGCTGAGGCAGCT
GTTGATGCGGTTCATGCTTTACTGAAGGAACTGGTTCACAAGGCCATCAG
TGAAACCCCTGAATTAAAGCAGTATCCTGCTCTCCGAGCAGAAGTTGGAA
ATGCAGCTATCGAGTCTCTTGAGAGAATGAGGGACACAAGCAAAAAAGCT
ACACTTCAGCTTGTTGATATGGAGTGCAGTTATCTGACAGTTGATTTCTT
CCGGAAGCTTCCTCAGGATGTTGACAAGGGTGGCAATCCTACACATTCAA
TTTTTGACAGATACAATGATTCGTATCTAAGGAGAATTGGAACCACGGTC
TTGTCTTATGTCAATATGGTCTGTGCAAGTCTGCGGAACTCAA
back to top