CX288742

Overview
NameCX288742
Unique NameCX288742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6827 contig Ccv1_Contig6827:52..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.899e-57
Identity = 112/160 (70.00%), Postives = 123/160 (76.88%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVP----TTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGE+FE++EAVALES TIKHMIEDDC D GIPLPNVT KIL+KV+EYCK+HVE      TT D                +EDLK+WD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:   13 DGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSS-DEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.141e-56
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGESFEVEEAVALES TI HM+EDDC D G+PLPNVT KILAKV+EYCK+HVE   ++                 ++DLK+WD DF+K+DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:   12 DGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 99/156 (63.46%), Postives = 115/156 (73.72%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGESFE+EEAVA++S TIKHMIEDDCAD GIPLPNVTG ILAKV+EYCKKHVE                       ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:   14 DGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE------NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.906e-49
Identity = 97/156 (62.18%), Postives = 110/156 (70.51%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGESFEVEEAVA+ES TIKHMIEDDC D GIPLPNVTG ILAKV+EYCKKHVE                        +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:   14 DGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTE------NHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.720e-47
Identity = 95/156 (60.90%), Postives = 108/156 (69.23%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DG+SFEVEEAVA++S TI HM+EDDC   GIPL NV  KIL KV+EYCKKH                        EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   12 DGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH---------------HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.007e-46
Identity = 95/157 (60.51%), Postives = 108/157 (68.79%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKK-HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DG+SFEVEEAVA++S TI HM+EDDC   GIPL NV  KIL KV+EYCKK HV+                      EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   12 DGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANP----------------ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.494e-42
Identity = 89/160 (55.62%), Postives = 108/160 (67.50%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHV--EVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKV--DQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGESF+VEEAVA++S TI HMIEDDC   G+P+ NVTG IL+KV+EYCKKHV  + PT +                 +++LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:   11 DGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEES----------------KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 88/157 (56.05%), Postives = 103/157 (65.61%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DGESFEVEEAVA +   ++HMIEDDC    +PL NVTGKIL+ VVEYCKKHV                        ++ K+WD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:   12 DGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 84/156 (53.85%), Postives = 95/156 (60.90%), Query Frame = 3
Query:   21 DGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DG SFEVEE  A +  TI HM EDDC D GIPLP VTGKIL  V+EYC KH                        +EDLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:   12 DGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH---------------HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CX288742 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.650e-39
Identity = 83/157 (52.87%), Postives = 99/157 (63.06%), Query Frame = 3
Query:   21 DGESFEVEEAVALE-STTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 488
            DG SFEVEE  A +    I HM E+DC D GIPLPNVTGKILA V+EYC KH                        ++DLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:   12 DGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH---------------HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
The following BLAST results are available for this feature:
BLAST of CX288742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH2.899e-5770.00SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH7.141e-5668.59SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH9.034e-5163.46SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH2.906e-4962.18SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH2.720e-4760.90SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH3.007e-4660.51SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH4.494e-4255.63SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH3.220e-4056.05SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH2.087e-3953.85SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH4.650e-3952.87SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionC02003H06SK IF1 Citrus clementina cDNA clone C02003H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288742 ID=CX288742; Name=CX288742; organism=Citrus clementina; type=EST; length=636bp
GAATTCGGCACGAGGGCTGTGACGGCGAGTCTTTCGAGGTCGAGGAGGCT
GTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTGCGC
CGATNACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGAAGG
TGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTACGACCCAGGATAGC
AACACCAGCGGCGCCAACAGCAACGGTGCTGCCACTAACGGTGGTGAGGA
GGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCACTC
TCTTCGATCTCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTG
GACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGA
GGAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGG
AAGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTT
CAACAAAGACAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTA
ACATGTAGATGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGGACT
TTCGAACTTATTAGCTGTTTGAAATGTAAATAATAG
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