CX288748

Overview
NameCX288748
Unique NameCX288748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6528 contig Ccv1_Contig6528:342..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288748 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 35/81 (43.21%), Postives = 42/81 (51.85%), Query Frame = 3 
Query:   54 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELKAAVXXXXXXXXXXXXXXXXXXXXXXXXV-TCGKTPPAGFTC 293
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L AA+                        +  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of CX288748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC1.499e-1143.2136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionC02004A03SK IF1 Citrus clementina cDNA clone C02004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288748 ID=CX288748; Name=CX288748; organism=Citrus clementina; type=EST; length=419bp
AGCCATGCCCATGTTCATACACACCACCTCCACCAGCTGCTGCCACATGC
CCCATTGACACCCTCAAATTGGGTGCTTGTGTGGACCTTCTTGGTGGGTT
GGTTCACATTGGTCTTGGTGACCCAGTTGTTAACCAATGCTGCCCAGTTC
TACAAGGACTTGTTGAGTTAAAAGCTGCTGTCTGCTTGTGCACTACTCTC
AAGCTCAAGCTGCTTAATCTTAACATCTATCTTCCACTTGCTCTTCAGCT
TCTTGTCACTTGCGGAAAGACACCACCCGCTGGTTTCACTTGCACTCTTT
AGATCTAAGGTTGGTAGATTGATGATGGATACTGAAGGAAGAAATCGACA
TGAAAGGATGTCGAGACTTATTTGTTTGTTTCTTTTTCTCTCTCCCCCAC
TCTCTCTGTCTTTCTCTCA
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