CX288750

Overview
NameCX288750
Unique NameCX288750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13956 contig Ccv1_Contig13956:178..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.701e-48
Identity = 98/140 (70.00%), Postives = 104/140 (74.29%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPS                     NISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+LKF T G    AF LS+GVG
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVG 140          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.671e-43
Identity = 88/141 (62.41%), Postives = 100/141 (70.92%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            MP+  IAVG P E +HPD  +AA+AEFISTLIFVFAG GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNISLL+ ++YW+AQLLGS VACLLLK  T G    AF+LS+GVGA
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGA 141          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.262e-43
Identity = 89/136 (65.44%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS 419
            MPIRNIAVG  +E  HP AL+AALAEFISTLIFVFAG+GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYWIAQLLGSTVAC LL+F T G  T  F L+
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGLT 136          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 8.178e-43
Identity = 90/142 (63.38%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   12 MPIRNIAVGHPREAT-HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            MP RNIA+G  +E   HP+ALRAALAEFISTLIFVFAG GSG+AFNK+T NGA TPS                     NISGGHVNPAVTFG  +GGNI+LLRGILYWIAQLLGS  AC LL F T G+   AF LS+GVG+
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGS 142          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.822e-42
Identity = 86/141 (60.99%), Postives = 98/141 (69.50%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            MP+  IAVG P E +HPD  +AA+AEFIS LIFVFAG GSGMAF+KLT  G  TPS                     NISGGHVNPAVTFGAFVGGNISL++ ++YW+AQLLGS VACLLLK  T G    AF+LS+GVGA
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGA 141          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.542e-41
Identity = 91/140 (65.00%), Postives = 101/140 (72.14%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAVTFGAFVGGNI+LLRGI+Y IAQLLGS VA  LL FVT   +  AF LS GVG
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVT-ASSVPAFGLSEGVG 139          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.861e-41
Identity = 84/136 (61.76%), Postives = 95/136 (69.85%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS 419
            MPI  IA+G  +E  HP AL+AA AEFISTLIFVFAG+GSGMAF+KLT  G  TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYW+AQLLGSTVAC LL+F T GQ T  F L+
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGLT 136          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.997e-41
Identity = 84/139 (60.43%), Postives = 98/139 (70.50%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGV 428
            MPI  IA+G P EA+ PDA+RAA AEF S +IFVFAG+GSGMA+ KLT +G  TP+                     N+SGGHVNPAVTFGAF+GGNI+LLR ILYWIAQLLG+ VACLLLK  T G  T+AF+LS GV
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGV 139          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 4.200e-39
Identity = 89/140 (63.57%), Postives = 99/140 (70.71%), Query Frame = 3
Query:   12 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVG 431
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAV FGAFVGGNI+LLRGI+Y IAQLLGS V   LL FVT   +  AF LS GVG
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVT-ASSVPAFGLSEGVG 138          
BLAST of CX288750 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.672e-33
Identity = 72/143 (50.35%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   21 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGA 434
            R    G   EATHPD++RA LAEF+ST +FVFA EGS ++ +KL      H G NTP                      N+SGGHVNPAVTFGA VGG ++ +R I YWIAQLLG+ +ACLLL+  TNG     F L+SGVGA
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGA 149          
The following BLAST results are available for this feature:
BLAST of CX288750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
TIP11_ARATH1.701e-4870.00Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_MAIZE3.671e-4362.41Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ6.262e-4365.44Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH8.178e-4363.38Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP12_ORYSJ1.822e-4260.99Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR1.542e-4165.00Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP11_MAIZE5.861e-4161.76Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP13_ARATH9.997e-4160.43Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP1_MEDSA4.200e-3963.57Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_ARATH7.672e-3350.35Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionC02004A05SK IF1 Citrus clementina cDNA clone C02004A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288750 ID=CX288750; Name=CX288750; organism=Citrus clementina; type=EST; length=435bp
TGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCCCCGTGAG
GCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAAC
TCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGC
TCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTT
GCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTC
CGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTA
ACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGA
TCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCAC
ATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCAT
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