CX288752

Overview
NameCX288752
Unique NameCX288752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15254 contig Ccv1_Contig15254:231..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: U559_DICDI (UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.302e-36
Identity = 74/110 (67.27%), Postives = 90/110 (81.82%), Query Frame = 3
Query:   66 KKVITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEH-IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNG 392
            KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I DRMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G
Sbjct:   11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKG 120          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: CT011_DANRE (Protein C20orf11 homolog OS=Danio rerio GN=zgc:73100 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.073e-29
Identity = 60/105 (57.14%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   75 ITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            IT+EEW  KLN+V I + DMN+L+MN+LVTEG+ +AAEKFRMESG E ++DL ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR
Sbjct:   10 ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIR 114          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: CT011_CHICK (Protein C20orf11 homolog OS=Gallus gallus GN=RCJMB04_9k15 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.932e-29
Identity = 58/105 (55.24%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   75 ITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            IT++EW +KLN++ I + DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR
Sbjct:   10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIR 114          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: CT011_MOUSE (Protein C20orf11 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.353e-28
Identity = 57/105 (54.29%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   75 ITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            IT++EW +KLN++ + + DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR
Sbjct:   10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIR 114          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: CT011_HUMAN (Protein C20orf11 OS=Homo sapiens GN=C20orf11 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.353e-28
Identity = 57/105 (54.29%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   75 ITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            IT++EW +KLN++ + + DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR
Sbjct:   10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIR 114          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: CT011_BOVIN (Protein C20orf11 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.353e-28
Identity = 57/105 (54.29%), Postives = 84/105 (80.00%), Query Frame = 3
Query:   75 ITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            IT++EW +KLN++ + + DMN+L+MN+LVTEG+ +AAEKFRMESG E  +DL T+ +R+ +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR
Sbjct:   10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIR 114          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: U559_NEMVE (UPF0559 protein v1g247787 OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.770e-28
Identity = 57/105 (54.29%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   75 ITREEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHI-DLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            + REEW +K+  ++  + +MN+L+M++LVTEGY +AAEKFR+ESGT+    L ++ DR+ +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR
Sbjct:    7 VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIR 111          
BLAST of CX288752 vs. ExPASy Swiss-Prot
Match: YDED_SCHPO (Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe GN=SPAC12B10.13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.926e-15
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   84 EEWEKKLNDVKIXKEDMNKLVMNFLVTEGYVDAAEKFRMESG-TEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 386
            E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+  T++     + +R+ + + ++ G++  AI K+N+L PEILDTN +L F L + RL+ELIR
Sbjct:   20 EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICELIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIR 121          
The following BLAST results are available for this feature:
BLAST of CX288752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
U559_DICDI2.302e-3667.27UPF0559 protein OS=Dictyostelium discoideum GN=DDB... [more]
CT011_DANRE6.073e-2957.14Protein C20orf11 homolog OS=Danio rerio GN=zgc:731... [more]
CT011_CHICK7.932e-2955.24Protein C20orf11 homolog OS=Gallus gallus GN=RCJMB... [more]
CT011_MOUSE1.353e-2854.29Protein C20orf11 homolog OS=Mus musculus PE=2 SV=1[more]
CT011_HUMAN1.353e-2854.29Protein C20orf11 OS=Homo sapiens GN=C20orf11 PE=1 ... [more]
CT011_BOVIN1.353e-2854.29Protein C20orf11 homolog OS=Bos taurus PE=2 SV=1[more]
U559_NEMVE8.770e-2854.29UPF0559 protein v1g247787 OS=Nematostella vectensi... [more]
YDED_SCHPO2.926e-1539.22Uncharacterized protein C12B10.13 OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionC02004A07SK IF1 Citrus clementina cDNA clone C02004A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288752 ID=CX288752; Name=CX288752; organism=Citrus clementina; type=EST; length=392bp
CACTGATGTCACTTTTCTGGATTGTGATTCGTCAGCTAGCGGAAATCGAG
GCAATGGCTATGTCAAAGAAAGTGATTACGCGGGAAGAGTGGGAGAAGAA
ACTTAATGATGTGAAGATTANGAAAGAAGATATGAATAAGTTAGTGATGA
ATTTTCTTGTCACTGAAGGTTATGTTGATGCTGCTGAGAAATTCCGGATG
GAATCTGGAACCGAACATATAGATCTTGCAACAATAACAGATCGCATGGC
TGTTAAAAAGGCTGTACAATGTGGGAACGTTGAGGATGCTATCGAGAAAG
TTAATGACTTAAACCCTGAGATATTGGATACAAATCCGCAACTGTTTTTC
CATCTGCAACAGCAGAGATTGATAGAATTAATTCGGAATGGA
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