CX288758

Overview
NameCX288758
Unique NameCX288758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13686 contig Ccv1_Contig13686:412..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.813e-30
Identity = 83/195 (42.56%), Postives = 117/195 (60.00%), Query Frame = 3
Query:    3 NRTLSELRASSSNCSSIGQSY-PNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN------------VRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKR--GFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N+T+S +  SSSN S + Q    N +  +  A +DCLEL  DT+ +L +A++ L   +  S   H+++ L S AMTN  TCLDGFA SD +            V + +K SL+NIS HVS+SL ML+ IPG          P  G++K   GFP W+S +DR LLQ  V+ TK +L+VA++G+GN+TTI EA+ A
Sbjct:   46 NQTISNVNLSSSNFSDLLQRLGSNLSHRDLCAFDDCLELLDDTVFDLTTAISKL---RSHSPELHNVKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIPGH--------IP--GKVKEDVGFPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAISA 227          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.559e-25
Identity = 73/189 (38.62%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    3 NRTLSELRASSSNCSSIG-QSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDG-NVRDV-------IKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N T+ ++  +SSN S +  + +PN    E+ A  DCL L  DTI +L++A++DL    L    ++D+  L +  MT Q TCLDGF+ SD  N  D+       +K  + +IS ++SNSL ML+ I      S+ +  P+   +   +P+WLS ND++LL+  V  T ++L VA DG+GNFTTI +AV A
Sbjct:   62 NLTILKVNLASSNFSDLQTRLFPNLTHYERCAFEDCLGLLDDTISDLETAVSDLRSSSL---EFNDISMLLTNVMTYQDTCLDGFSTSDNENNNDMTYELPENLKEIILDISNNLSNSLHMLQVI------SRKKPSPKSSEVDVEYPSWLSENDQRLLEAPVQETNYNLSVAIDGTGNFTTINDAVFA 241          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.648e-25
Identity = 70/168 (41.67%), Postives = 100/168 (59.52%), Query Frame = 3
Query:   69 NFNTLEKRAINDCLELFHDTIVELKSALNDLSP---KKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKKIPGDNM-----SSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N    EK A++DCLE   +T+ EL  A+ DL     KK  S+H  DL+TL S AMTNQ TCLDGF++ D N  VRD +     ++ +  SN+L M+K +   +M     S+  ++  E   +  G+P WLS  DR+LLQ S ++T  +++VA DGSGNF T+  +V A
Sbjct:  129 NLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVD-GWPAWLSTGDRRLLQSS-SVTP-NVVVAADGSGNFKTVAASVAA 293          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 3
Query:   69 NFNTLEKRAINDCLELFHDTIVELKSALNDLSP---KKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKKIPGDNM----SSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N    EK A++DCLE   +T+ EL  A+ DL     KK  S+H  DL+TL S AMTNQ TCLDGF++ D N  VRD +     ++ +  SN+L M+K +   +M    +S      E      G+P WLS  DR+LLQ S ++T  + +VA DGSGNF T+  AV A
Sbjct:  129 NLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSS-SVTP-NAVVAADGSGNFKTVAAAVAA 293          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.318e-21
Identity = 64/188 (34.04%), Postives = 104/188 (55.32%), Query Frame = 3
Query:    3 NRTLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLS---PKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAY--SDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIK-----RGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAV 536
            N T+  +R +      + ++       EK A++DCLE   +T+ EL +A+ DL     KK   +H  DL+TL S A+TNQ TCLDGF++  +D  VR V+     ++ +  SN+L M+  +   +++++ ++       K       +P WLS  DR+LLQ S      D++VA DGSG++ T++EAV
Sbjct:  105 NITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPANNRKLVEDNGEWPEWLSAGDRRLLQSST--VTPDVVVAADGSGDYKTVSEAV 290          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.318e-21
Identity = 70/173 (40.46%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   84 EKRAINDCLELFHDTIVELKSALNDLS--PK-KLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKK-----IPGDNMSSKYEVFPEYGRIK----------RGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            E  A++DCLE   +T+ EL  A+ DL   PK K   KH  DL+TL S A+TNQ TCLDGF+Y D +  VR  +     ++    SN+L M+K      I    +  K   F      K           G+P WLS+ DR+LLQ S    K D  VA DGSG+FTT+  AV A
Sbjct:  126 EVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGST--IKADATVADDGSGDFTTVAAAVAA 296          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 66/181 (36.46%), Postives = 90/181 (49.72%), Query Frame = 3
Query:   84 EKRAINDCLELFHDTIVELKSALNDLS---PKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKKIPGD---NMSSKYEVFPEYGRIK--------------------RGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            EK A++DCLE   +T+ EL   + DL     KK   +H  DL+TL S A+TNQ TCLDGF++ D +  VR  +     ++    SN+L M+K +      N   K ++     ++K                     G+PTWLS  DR+LLQ S    K D  VA DGSG F T+  AV A
Sbjct:  123 EKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRLLQGSG--VKADATVAADGSGTFKTVAAAVAA 301          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   93 AINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLY----------NISRHVSNSLVMLKKIP-GDNMSSKYEV--FPEYGRIKRG----------------FPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            A+ DCLEL+ DTI +L  +         P    HD QT  S A+ NQ TC +GF       RD   +S Y          N+++ +SNSL + K     + ++ KY    F ++ + +                  FP+W  L+DRKLL+ S    K DL+VAKDGSG++T+I +AV A
Sbjct:  103 ALFDCLELYEDTIDQLNHSRRSYGQYSSP----HDRQTSLSAAIANQDTCRNGF-------RDFKLTSSYSKYFPVQFHRNLTKSISNSLAVTKAAAEAEAVAEKYPSTGFTKFSKQRSSAGGGSHRRLLLFSDEKFPSWFPLSDRKLLEDSKTTAKADLVVAKDGSGHYTSIQQAVNA 270          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   75 NTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPS--KHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQK-SVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            N  +K AI  C  L  D   E  ++LN ++  ++ S  K   DL++  S  M+ Q TCLDGF   +GN++  +K+S+ +     SNSL ++K    +N+S   +V   +  +  G P+W+S +DR++L+   V   K +  VAKDGSG+FTTI +A+ A
Sbjct:  168 NQDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGF--EEGNLKSEVKTSVNSSQVLTSNSLALIKTFT-ENLSPVMKVVERH--LLDGIPSWVSNDDRRMLRAVDVKALKPNATVAKDGSGDFTTINDALRA 321          
BLAST of CX288758 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 3
Query:   93 AINDCLELFHDTIVELKSALN-DLSPKKLPSKHYH---DLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVML---------KKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 542
            AI DC++L      EL   ++   SP    +       DL+T  S A++NQ TCLDGF  ++G ++ ++   L  +   V N L M+         K I    M+  +  F +       FP+W+   DRKLLQ   N+T  D +VA DG+GNFTTI++AV A
Sbjct:   80 AIVDCVDLLDSAAEELSWIISASQSPNGKDNSTGDVGSDLRTWISAALSNQDTCLDGFEGTNGIIKKIVAGGLSKVGTTVRNLLTMVHSPPSKPKPKPIKAQTMTKAHSGFSK-------FPSWVKPGDRKLLQTD-NITVADAVVAADGTGNFTTISDAVLA 234          
The following BLAST results are available for this feature:
BLAST of CX288758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PME40_ARATH2.813e-3042.56Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME39_ARATH3.559e-2538.62Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_CITSI4.648e-2541.67Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI6.070e-2542.51Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC5.318e-2134.04Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME2_ARATH5.318e-2140.46Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH3.447e-2036.46Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME6_ARATH3.020e-1634.08Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME13_ARATH3.944e-1635.85Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME32_ARATH1.957e-1534.97Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionC02004B01SK IF1 Citrus clementina cDNA clone C02004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288758 ID=CX288758; Name=CX288758; organism=Citrus clementina; type=EST; length=542bp
TAAACCGCACATTGTCCGAGCTGAGAGCCTCCTCCTCAAACTGCTCCAGC
ATTGGACAGAGTTACCCAAATTTTAACACCCTTGAAAAGAGAGCAATCAA
TGACTGTCTCGAGCTGTTTCATGACACCATTGTTGAGCTCAAATCAGCTC
TCAATGATCTCTCCCCCAAGAAATTGCCCTCCAAGCATTACCATGATTTG
CAAACTTTGTTCAGCGGTGCAATGACAAACCAGTACACGTGTCTTGATGG
GTTCGCTTACAGTGACGGAAACGTGAGGGACGTTATTAAGAGCAGCTTGT
ACAACATTTCCAGGCACGTGAGCAACTCTTTGGTTATGCTCAAGAAAATC
CCCGGTGATAACATGTCTTCCAAGTACGAGGTTTTTCCTGAGTATGGGCG
TATTAAGAGAGGATTCCCAACTTGGTTGTCTTTAAATGATCGCAAATTGT
TACAGAAGTCCGTTAATTTGACCAAATTTGATCTGATAGTGGCTAAAGAT
GGCTCTGGGAATTTCACTACCATTACTGAAGCAGTGGAAGCA
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