CX288759

Overview
NameCX288759
Unique NameCX288759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 3.391e-79
Identity = 131/162 (80.86%), Postives = 145/162 (89.51%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICSP 487
            KCQ GCGQPTQRWYHVPR+WLKP+QN LV+FEELGGNPS +SLVKRSV+ VCAEV+EYHP IKNW IESYGK + FH PKVHL+CSPG AI+SI FASFGTPLGTCGSYQQG CH+ TSY IL +KCVGK RCAVTISNSNFG DPCPNVLKRL+VEA+C+P
Sbjct:  686 KCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSVSGVCAEVSEYHPNIKNWQIESYGKGQTFHRPKVHLKCSPGQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILERKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCAP 847          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 7.087e-69
Identity = 115/161 (71.43%), Postives = 137/161 (85.09%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            KCQ GCGQPTQRWYHVPRSWL+PT+N LVVFEELGG+ S+I+L KR+V+ VCA+V+EYHP IKNW IESYG+PE FH+ KVHL+C+PG  IS+I FASFGTPLGTCG++QQG CHS  S  +L KKC+G QRC V IS SNFG DPCP V+KR++VEA+CS
Sbjct:  679 KCQAGCGQPTQRWYHVPRSWLQPTRNLLVVFEELGGDSSKIALAKRTVSGVCADVSEYHPNIKNWQIESYGEPE-FHTAKVHLKCAPGQTISAIKFASFGTPLGTCGTFQQGECHSINSNSVLEKKCIGLQRCVVAISPSNFGGDPCPEVMKRVAVEAVCS 838          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 9.935e-55
Identity = 97/161 (60.25%), Postives = 117/161 (72.67%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            KC   CG+ +QRWYHVPRSWL PT N LVVFEE GG+P  I+LVKR + SVCA++ E+ P + NW     GK +    PK HL+C+PG  ISSI FASFGTP G CG++QQG CH+P SYD   K CVGK+ C+V ++  NFG DPC NVLK+LSVEAICS
Sbjct:  675 KCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPYGITLVKREIGSVCADIYEWQPQLLNWQRLVSGKFDRPLRPKAHLKCAPGQKISSIKFASFGTPEGVCGNFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.174e-53
Identity = 93/160 (58.13%), Postives = 115/160 (71.88%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            KCQ  CG  +QRWYHVPRSWL PT N LV+FEE GG+P+ IS+VKRS+ SVCA+V+E+ P++KNWH + Y K       KVHL+C  G  I+ I FASFGTP G+CGSY +G CH+  SYDI  K CVG++RC V++    FG DPCP  +KR  VEAIC
Sbjct:  673 KCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRSIGSVCADVSEWQPSMKNWHTKDYEK------AKVHLQCDNGQKITEIKFASFGTPQGSCGSYTEGGCHAHKSYDIFWKNCVGQERCGVSVVPEIFGGDPCPGTMKRAVVEAIC 826          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.299e-53
Identity = 90/161 (55.90%), Postives = 120/161 (74.53%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            KC   CG+ +QRWYHVPRSWLKP+ N LVVFEE GG+P+ I+LV+R V SVCA++ E+  T+ N+ + + GK  +   PK HL+C PG  I+++ FASFGTP GTCGSY+QG CH+  SYD   K CVG+  C+VT++   FG DPCPNV+K+L+VEA+C+
Sbjct:  687 KCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLVRREVDSVCADIYEWQSTLVNYQLHASGKVNKPLHPKAHLQCGPGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDPCPNVMKKLAVEAVCA 847          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.290e-51
Identity = 94/165 (56.97%), Postives = 116/165 (70.30%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDI-----LXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAIC 481
            KC   CG+ +QRWYHVPRSWL PT NFLVV EE GG+P+ IS+VKRSV SVCAEV E  PT+ NW  ++YG+      PKVHL C PG  +S I FASFGTP GTCGS+ +G CH+  SYD      L + CVG++ C+V ++   FG DPCP  +K+L+VEAIC
Sbjct:  673 KCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDPTGISMVKRSVASVCAEVEELQPTMDNWRTKAYGR------PKVHLSCDPGQKMSKIKFASFGTPQGTCGSFSEGSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.626e-44
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTI--KNWHIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            KC+ GCGQPTQRWYHVPRSW  P+ N LV+FEE GG+P++I+  +R+V SVC+ V+E++P+I  ++W   +     +  + KV L C  G +ISS+ F SFG P GTC SYQQG CH P S  ++ K C+    C V++S+  FG D CP V K L++EA CS
Sbjct:  691 KCRRGCGQPTQRWYHVPRSWFHPSGNTLVIFEEKGGDPTKITFSRRTVASVCSFVSEHYPSIDLESWDRNTQNDGRD--AAKVQLSCPKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKACLNMNGCTVSLSDEGFGEDLCPGVTKTLAIEADCS 851          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.943e-42
Identity = 79/164 (48.17%), Postives = 109/164 (66.46%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAE-YHPTIKNW-HIESYGKPEEFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICSP 487
            KCQ  CG PTQ WYH+PR WLK + N LV+FEE GG+PS ISL      +VC+ ++E Y+P +  W H+ S        +P++ L+C  GH IS I FAS+GTP G C ++ +G CH+ ++ D++ + CVG  +CA+++SN  FG DPC  VLK L+VEA CSP
Sbjct:  746 KCQSNCGMPTQNWYHIPREWLKESDNLLVLFEETGGDPSLISLEAHYAKTVCSRISENYYPPLSAWSHLSSGRASVNAATPELRLQCDDGHVISEITFASYGTPSGGCLNFSKGNCHASSTLDLVTEACVGNTKCAISVSNDVFG-DPCRGVLKDLAVEAKCSP 908          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.851e-39
Identity = 76/167 (45.51%), Postives = 102/167 (61.08%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYH-PTIKNWHIESYGKPE---EFHSPKVHLRCSPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICSPT 490
            KC   CG+PTQ  YHVPRSWLKP+ N LV+FEE GGNP +IS+   +   +C +V+E H P ++ W    Y          +P+VHL C  GH ISSI FAS+GTP G+C  +  G CH+  S  I+ + C G+  C + +SN+ F  DPC   LK L+V + CSP+
Sbjct:  713 KCTTNCGKPTQTRYHVPRSWLKPSSNLLVLFEETGGNPFKISVKTVTAGILCGQVSESHYPPLRKWSTPDYINGTMSINSVAPEVHLHCEDGHVISSIEFASYGTPRGSCDGFSIGKCHASNSLSIVSEACKGRNSCFIEVSNTAFISDPCSGTLKTLAVMSRCSPS 879          
BLAST of CX288759 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.193e-37
Identity = 79/165 (47.88%), Postives = 103/165 (62.42%), Query Frame = 2
Query:    2 KCQLGCGQPTQRWYHVPRSWLKPTQNFLVVFEELGGNPSRISLVKRSVTSVCAEVAEYHPTIKNWHIESYGKPE---EFHSPKVHLRC-SPGHAISSIXFASFGTPLGTCGSYQQGPCHSPTSYDILXKKCVGKQRCAVTISNSNFGVDPCPNVLKRLSVEAICS 484
            KC   CGQP+Q  YHVPRS+L+P  N LV+FE+ GG+PS IS   R  +S+CA V+E HP      I+S+  P+   +   P + L C   G  IS+I FASFGTP GTCG+Y  G C S  +  ++ + CVG   C+V +S++NFG DPC  V K L VEA CS
Sbjct:  699 KCLKKCGQPSQTLYHVPRSFLQPGSNDLVLFEQFGGDPSMISFTTRQTSSICAHVSEMHPA----QIDSWISPQQTSQTQGPALRLECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEACVGMTNCSVPVSSNNFG-DPCSGVTKSLVVEAACS 858          
The following BLAST results are available for this feature:
BLAST of CX288759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
BGAL3_ARATH3.391e-7980.86Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL5_ORYSJ7.087e-6971.43Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL_SOLLC9.935e-5560.25Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL2_ORYSJ4.174e-5358.13Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL1_ARATH9.299e-5355.90Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_ASPOF2.290e-5156.97Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL3_ORYSJ4.626e-4449.69Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGA15_ORYSJ1.943e-4248.17Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGAL9_ARATH5.851e-3945.51Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGAL6_ORYSJ4.193e-3747.88Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC02004B02SK IF1 Citrus clementina cDNA clone C02004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288759 ID=CX288759; Name=CX288759; organism=Citrus clementina; type=EST; length=492bp
AAAATGTCAACTAGGTTGCGGGCAACCAACCCAAAGATGGTACCATGTGC
CTCGCTCTTGGTTGAAGCCAACACAGAATTTTTTAGTCGTTTTTGAAGAA
CTAGGAGGTAATCCATCAAGAATTTCTCTTGTCAAGAGATCAGTAACCAG
TGTTTGCGCTGAGGTTGCTGAGTACCATCCAACTATCAAGAACTGGCACA
TAGAAAGCTATGGAAAACCAGAAGAGTTCCACAGCCCCAAGGTTCACTTG
CGATGTAGTCCAGGACATGCCATTTCATCCATCANATTTGCAAGCTTTGG
AACTCCTTTGGGAACTTGTGGTAGTTACCAGCAAGGACCTTGCCATTCTC
CCACTTCTTATGACATCTTANAGAAGAAGTGTGTCGGGAAGCAAAGATGT
GCAGTCACCATATCAAACAGTAACTTTGGCGTAGACCCATGTCCAAATGT
GTTGAAGCGATTATCAGTTGAAGCTATATGTTCTCCTACGAC
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