CX288765

Overview
NameCX288765
Unique NameCX288765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig148 contig Ccv1_Contig148:1..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 5.502e-72
Identity = 132/175 (75.43%), Postives = 154/175 (88.00%), Query Frame = 2
Query:    5 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 529
            QVSD   D +   YT+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA DGV+LWDLRKL+NF+SF S+D+    NSV+FD SGSYL +A++DI+VYQ ASVKA+WN IKT PDLSGTGKATCVKFG DA+Y+AVGSMDRNLR+FGLPG++
Sbjct:  346 QVSD---DSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADA----NSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGTGKATCVKFGSDAQYVAVGSMDRNLRIFGLPGDE 513          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.268e-68
Identity = 128/175 (73.14%), Postives = 151/175 (86.29%), Query Frame = 2
Query:    5 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 529
            QV+DA  +     YT+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA DGV+LWDLRKLKNFR+F+  D+    NSV+FDHSGSYL +A++DIRV+Q ASVKA+WN IKT PDLSGTGKAT VKFG D+KYIAVGSMDRNLR+FGLP +D
Sbjct:  346 QVTDASEND--VNYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDA----NSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIKTLPDLSGTGKATSVKFGLDSKYIAVGSMDRNLRIFGLPDDD 514          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG  AK+IA   MDR+L+ + L
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG  AK+IA   MDR+L+ + L
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG  AK+IA   MDR+L+ + L
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG  AK+IA   MDR+L+ + L
Sbjct:  355 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 505          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 2
Query:   47 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W  I  F + SG    T V FG  AK+IA   MDR+L+ + L
Sbjct:  354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.670e-34
Identity = 75/155 (48.39%), Postives = 106/155 (68.39%), Query Frame = 2
Query:   50 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            S  FHPDGLI GTG ++A+VKIWD+K+Q   A F GH  AV +I+FSENGYYLAT + DG VKLWDLRKLKN ++F +++ + P NS+ FD +G++L +    ++V  V S    W+ + +  D S  G  T V+FG +A+ +   S+D++LRVF
Sbjct:  343 SIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTF-ANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKS----WSEVVSLSDHS--GPVTGVRFGENARSLVTCSLDKSLRVF 490          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: PRP19_DICDI (Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 64/165 (38.79%), Postives = 88/165 (53.33%), Query Frame = 2
Query:   44 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPT------NSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGK--ATCVKF---GPDAKYIAVGSMDRNL 502
            YTS AFHPDG+    GT   +VKI+D+KS+ N   F G   AV  ISFSENGYYL  A ++ VKL+DLRK     +  S D +T T       S++FD+S  YL VAS++ I +Y   S        K  P +S      + C+ F    P++ +    S  +N+
Sbjct:  355 YTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKA---ATKNSPDIQTITLDNQQIKSINFDYSSQYLGVASSNQINLYSCKS--------KQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKNI 508          
BLAST of CX288765 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.965e-17
Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 529
            G      S  F+PDG  L +G+S+  V++W++ S   +  F GH   V ++ F+ +G  LA+ + D  V+LWD+   K   +F+   +    NSV F+  GS LA  S D  +R+++++S K    C+ TF     T   + V F PD   +A GS D+ +R++ +   +
Sbjct: 1198 GHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNW--VNSVAFNPDGSMLASGSGDQTVRLWEISSSK----CLHTFQ--GHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359          

HSP 2 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   38 EGYTS----AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            +GYTS      F P+G+ L  G+S+ +V++WD+ S+  +    GH   V A++FS +G  LA+ + D  V+LWD+   K     +   S    NSV F+  GS LA  S+D  +R++++ S K    C+ TF     T     V F PD   +A GS D+ +R++ +
Sbjct: 1113 QGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSW--VNSVVFNPDGSTLASGSSDQTVRLWEINSSK----CLCTFQ--GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271          

HSP 3 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            G      S  F+PDG +L +G+S+  V++WD+ S   +  F GH   V +++F+ +G  LA+ + D  V+LW++   K   +F+   S    +SV F   G+ LA  S D  +R++ ++S      C+ TF  L  T     V F PD   +A GS D+ +R++ +
Sbjct: 1240 GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW--VSSVTFSPDGTMLASGSDDQTVRLWSISS----GECLYTF--LGHTNWVGSVIFSPDGAILASGSGDQTVRLWSI 1397          

HSP 4 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 52/164 (31.71%), Postives = 84/164 (51.22%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            G      + AF PDG  L +G+ +  V++WD+ S   +    GH   V ++ F+ +G  LA+ + D  V+LW++   K   +F+   S    NSV F+  GS LA  S+D  +R++ ++S K    C+ TF     T     V F PD   +A GS D+ +R++
Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSW--VNSVVFNPDGSMLASGSSDKTVRLWDISSSK----CLHTFQ--GHTNWVNSVAFNPDGSMLASGSGDQTVRLW 1311          

HSP 5 Score: 77.411 bits (189), Expect = 5.234e-14
Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVK---FGPDAKYIAVGSMDRNLRVFGL 517
            G      S  F P+ L+L +G+S+  V++WD+ S   +  F GH G V +++F+ +G  LAT + D  V+LWD+   + F  F+   S     SV F   G+ LA  S D  +R++ ++S     NC+ T       G  +CV+   F PD   +A G  D+ +R++ +
Sbjct:  946 GHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTS--CVRSVVFSSDGAMLASGSDDQTVRLWDISS----GNCLYTL-----QGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI 1103          

HSP 6 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK-ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 529
            G      S AF+PDG +L +G+ +  V++W++ S   +  F GH   V++++FS +G  LA+ + D  V+LW +   +   +F    +     SV F   G+ LA  S D  +R++ ++S K    C+ T   L G       + F PD   +A GS D+ +R++ +   +
Sbjct: 1282 GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW--VGSVIFSPDGAILASGSGDQTVRLWSISSGK----CLYT---LQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGE 1443          

HSP 7 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 47/157 (29.94%), Postives = 76/157 (48.41%), Query Frame = 2
Query:   50 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 511
            S  F PDG +L +G  + +V++WD+ S   +    G+   V  + FS NG  LA  + D  V+LWD+   K   + +   +    N+V F   G+ LA  S D  +R++ ++S K    C+        T     V F PD   +A GS D+ +R++
Sbjct: 1079 SVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNW--VNAVAFSPDGATLASGSGDQTVRLWDISSSK----CLYILQ--GHTSWVNSVVFNPDGSTLASGSSDQTVRLW 1227          

HSP 8 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 46/159 (28.93%), Postives = 79/159 (49.69%), Query Frame = 2
Query:   50 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 517
            + AF PDG +  TG S  +V+ W+  +   +    GH   V ++ FS++G  LA+ + D  V+LWD+   +  ++F+   S     SV F  +   LA  S+D  +R++ ++S      C+  F     TG    V F  D   +A GS D+ +R++ +
Sbjct:  869 TVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSR--VRSVVFSPNSLMLASGSSDQTVRLWDISS----GECLYIFQ--GHTGWVYSVAFNLDGSMLATGSGDQTVRLWDI 1019          

HSP 9 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = 2
Query:   29 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVK---FGPDAKYIAVGSMDRNLRVFGL 517
            G      S  F  DG +L +G+ +  V++WD+ S   +  F GH   V ++ FS N   LA+ + D  V+LWD+   +    F+         SV F+  GS LA  S D  +R++ ++S +    C   F      G  +CV+   F  D   +A GS D+ +R++ +
Sbjct:  904 GHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGW--VYSVAFNLDGSMLATGSGDQTVRLWDISSSQ----CFYIF-----QGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDI 1061          
The following BLAST results are available for this feature:
BLAST of CX288765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PR19B_ARATH5.502e-7275.43Pre-mRNA-processing factor 19 homolog 2 OS=Arabido... [more]
PR19A_ARATH1.268e-6873.14Pre-mRNA-processing factor 19 homolog 1 OS=Arabido... [more]
PRP19_RAT2.184e-3651.27Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE2.184e-3651.27Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
PRP19_HUMAN2.184e-3651.27Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_CHICK2.184e-3651.27Pre-mRNA-processing factor 19 OS=Gallus gallus GN=... [more]
PRP19_BOVIN2.184e-3651.27Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
PRP19_CAEEL2.670e-3448.39Pre-mRNA-processing factor 19 homolog OS=Caenorhab... [more]
PRP19_DICDI1.089e-1938.79Pre-mRNA-processing factor 19 homolog OS=Dictyoste... [more]
YY46_ANASP2.965e-1731.18Uncharacterized WD repeat-containing protein alr34... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004B08SK IF1 Citrus clementina cDNA clone C02004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288765 ID=CX288765; Name=CX288765; organism=Citrus clementina; type=EST; length=559bp
GACACAGGTTTCAGATGCTGGAACCGACGGTAGACCTGAAGGTTATACAT
CTGCAGCTTTTCATCCTGATGGTCTCATCCTTGGAACGGGCACCTCAGAA
GCTCTTGTTAAGATTTGGGATGTGAAAAGTCAGGCAAATGTGGCGAAATT
TGATGGACATGTTGGAGCAGTTACAGCCATATCCTTTTCAGAAAATGGTT
ACTACCTTGCGACGGCAGCCCATGATGGTGTGAAGCTGTGGGACCTGCGT
AAATTGAAGAACTTCCGGTCATTTGAATCTTCTGATTCTGAGACACCTAC
CAACTCAGTGGATTTCGACCATAGTGGATCTTACCTCGCAGTTGCAAGTG
CAGATATAAGAGTCTACCAAGTGGCCAGTGTTAAAGCTGATTGGAATTGT
ATCAAAACTTTTCCTGATTTATCAGGCACAGGTAAGGCAACTTGTGTGAA
ATTTGGTCCAGATGCTAAATACATTGCTGTGGGATCAATGGACCGCAATC
TACGTGTATTTGGTCTGCCTGGCAATGATGCTCCATCAAAATCATAGAGA
ATTCTAAAA
back to top