CX288768

Overview
NameCX288768
Unique NameCX288768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig149 contig Ccv1_Contig149:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAB_ARATH (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 7.262e-84
Identity = 153/158 (96.84%), Postives = 157/158 (99.37%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 474
            TIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI+PQVLEM+NNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct:  355 TIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITC 512          

HSP 2 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 39/153 (25.49%), Postives = 79/153 (51.63%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMG 459
            T  +L+P ++ LL+D   +VR+    K+ +  +++  ++  Q +LP + EL+ D    VR A+   I  +A  LG     + L  + +  L+D+   +R    + L ++ +  G +   Q ++P ++E+  + H+  R+ I+  I LLA  +G
Sbjct:  277 TRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAG_ARATH (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 4.707e-83
Identity = 152/158 (96.20%), Postives = 157/158 (99.37%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 474
            TIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI+PQVLEMINNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct:  355 TIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITC 512          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAA_ARATH (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.159e-81
Identity = 146/158 (92.41%), Postives = 156/158 (98.73%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 474
            TIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH++PQVL+M+NNPHYL+RM +LRAISL+APVMGSEITC
Sbjct:  355 TIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITC 512          

HSP 2 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 41/156 (26.28%), Postives = 74/156 (47.44%), Query Frame = 1
Query:    4 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 471
            I +++ +F  L KD+   VRL  +     + +++        +LP IV  ++D+ WRVR  +   +  L   +G       L    ++ L+D    +R AAA  + +      PE A+QHI+P V E+ ++     R  +   I  +AP++G + T
Sbjct:  200 IAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVARILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDST 355          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAA_PEA (Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 7.776e-78
Identity = 148/158 (93.67%), Postives = 154/158 (97.47%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL-AEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 471
            TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL MQWL+DK YSIR+AAANN+KRL AEEFGPEWAMQHIIPQVL+MIN+PHYLYRMTIL AISLLAPV+GSEIT
Sbjct:  162 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYRMTILHAISLLAPVLGSEIT 319          

HSP 2 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 40/153 (26.14%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMG 459
            T  +L+P ++ LL+D   +VR+    K+ + ++++  +L  Q +LP + EL+ D    VR A+   I  +A  LG     ++L  + +  L+D+   +R    + L ++ +  G +   Q ++P ++E+  + H+  R+ I+  I LLA  +G
Sbjct:   84 TKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 236          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAA_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.686e-56
Identity = 108/156 (69.23%), Postives = 132/156 (84.62%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 468
            T+  LL +FL LLKD+FPDVRLNIISKLDQV++VIGI++LSQSLLPAIVELAED  WRVRLAII+YIPLLASQLGV FFD+KLG LCM WL D V+SIR+AA NNLK+L E FG +WA  +IIP+VL + ++P+YLYRMT L +IS L+ V+G ++
Sbjct:  359 TLTHLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDV 514          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAB_HUMAN (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 2.691e-54
Identity = 107/157 (68.15%), Postives = 125/157 (79.62%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 471
            TIE LLP+FL+ LKDE PDVRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I+P+VL M N+P+YL+RMT L  I+ L+   G EIT
Sbjct:  373 TIEHLLPLFLAQLKDECPDVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGQEIT 529          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAB_PIG (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.591e-54
Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 471
            TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I+P+VL M N+P+YL+RMT L  I++L+   G EIT
Sbjct:  374 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINVLSEACGQEIT 530          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAA_SCHPO (Protein phosphatase PP2A regulatory subunit A OS=Schizosaccharomyces pombe GN=paa1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.591e-54
Identity = 104/156 (66.67%), Postives = 129/156 (82.69%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 468
            T E LLP+FL LLKDE P+VRLNIISKL+ VN+V+GI+LLSQSLLPAIV LAED+ WRVRLAII+YIPLLA QLGV FF++K+G LCM WL+D VYSIR+AA  NL++L E FG EWA + IIP+ L M ++P+YLYRMT + AIS +AP + +E+
Sbjct:  359 TTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEV 514          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAB_RAT (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 7.831e-54
Identity = 106/157 (67.52%), Postives = 125/157 (79.62%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 471
            TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I+P+VL M N+P+YL+RMT L  I+ L+   G EIT
Sbjct:  373 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGKEIT 529          
BLAST of CX288768 vs. ExPASy Swiss-Prot
Match: 2AAB_MOUSE (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 7.831e-54
Identity = 106/157 (67.52%), Postives = 125/157 (79.62%), Query Frame = 1
Query:    1 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 471
            TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I+P+VL M N+P+YL+RMT L  I+ L+   G EIT
Sbjct:  373 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGKEIT 529          
The following BLAST results are available for this feature:
BLAST of CX288768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
2AAB_ARATH7.262e-8496.84Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAG_ARATH4.707e-8396.20Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_ARATH1.159e-8192.41Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_PEA7.776e-7893.67Protein phosphatase PP2A regulatory subunit A (Fra... [more]
2AAA_DICDI1.686e-5669.23Serine/threonine-protein phosphatase 2A regulatory... [more]
2AAB_HUMAN2.691e-5468.15Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAB_PIG4.591e-5467.52Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_SCHPO4.591e-5466.67Protein phosphatase PP2A regulatory subunit A OS=S... [more]
2AAB_RAT7.831e-5467.52Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAB_MOUSE7.831e-5467.52Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC02004B11SK IF1 Citrus clementina cDNA clone C02004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288768 ID=CX288768; Name=CX288768; organism=Citrus clementina; type=EST; length=475bp
ACAATTGAGCAGCTTCTTCCAATATTTCTCTCTCTTTTGAAGGATGAATT
TCCCGATGTGCGCCTCAATATCATCAGCAAGCTTGATCAAGTGAATCAGG
TTATTGGAATTGATCTACTGTCGCAATCCCTATTACCAGCCATTGTTGAG
CTTGCGGAGGATAGACATTGGAGAGTTCGTCTTGCAATAATAGAGTACAT
TCCTTTATTGGCCAGTCAGTTGGGCGTAGGATTCTTTGATGACAAACTTG
GTGCTCTTTGTATGCAATGGTTACAGGATAAGGTTTATTCTATTCGAGAT
GCTGCTGCTAACAACTTGAAGCGTCTTGCTGAAGAATTTGGTCCAGAGTG
GGCAATGCAGCACATAATTCCTCAGGTTTTGGAGATGATTAATAATCCCC
ACTACTTGTACCGGATGACCATTTTGCGTGCCATCTCTCTCCTTGCTCCT
GTCATGGGATCAGAAATCACATGTT
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