CX288770

Overview
NameCX288770
Unique NameCX288770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288770_ssr493 microsatellite CX288770_ssr493:493..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:911..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.477e-43
Identity = 93/145 (64.14%), Postives = 99/145 (68.28%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR---------------AQKXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLALA 399
            KPDRPDEL RIEAAGGRVIYWDG RVLGVLAMSRAIGD YLKPYV SEPEVTVTERT +DECLILASDGLWDVV+NE AC VVR CF                +                     +SSDKAC DA++LLTKLALA
Sbjct:  252 KPDRPDELERIEAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVRACFHNNGPPAPAARPSGVPSSAEAAETENGGAASVKGISKAESSDKACSDAAMLLTKLALA 396          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.023e-42
Identity = 87/130 (66.92%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLALA 399
            KPDRPDEL+RI+ AGGRVIYWDG RVLGVLAMSRAIGDNYLKPYVI +PEVTVT+RT EDECLILASDGLWDVV NETAC V R C R                       ++  AC DA++LLTKLALA
Sbjct:  260 KPDRPDELIRIQQAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVARMCLRG--------------AGAGDDSDAAHNACSDAALLLTKLALA 375          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.334e-41
Identity = 90/136 (66.18%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQ------KXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLALA 399
            KPDRPDEL RI+AAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVIS PEVTVT+R   D+ LILASDGLWDVVSNETACSVVR C R +                             DKAC +AS+LLT+LALA
Sbjct:  260 KPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLALA 395          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.982e-41
Identity = 90/146 (61.64%), Postives = 97/146 (66.44%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXXQS----------------SDKACLDASILLTKLALA 399
            KPDRPDEL RI+AAGGRVIYWDG RVLGVLAMSRAIGD YLKPYV SEPEVTVTER  +DECLILASDGLWDVV+NE AC VVR CFR+                      S                SDKAC DA++LL KLA+A
Sbjct:  252 KPDRPDELERIKAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERADDDECLILASDGLWDVVTNEMACEVVRACFRSNGPPSPPGCSRPKAVLPPPAGASGGGGGDAVVKGVDKAESDKACADAALLLAKLAIA 397          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.792e-41
Identity = 89/130 (68.46%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLALA 399
            KPDRPDEL RIE AGGRVIYWD PRVLGVLAMSRAIGDNYLKPYV  EPEVT+T+R  +D+CLILASDGLWDVVSNETACSV R C R                        SDKAC +AS+LLTKLALA
Sbjct:  229 KPDRPDELDRIEGAGGRVIYWDCPRVLGVLAMSRAIGDNYLKPYVSCEPEVTITDR-RDDDCLILASDGLWDVVSNETACSVARMCLRG-----------GGRRQDNEDPAISDKACTEASVLLTKLALA 346          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.509e-40
Identity = 87/148 (58.78%), Postives = 100/148 (67.57%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCF------------------RAQKXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLALA 399
            KPDRPDEL RI+ AGGRVIYWDG RVLGVLAMSRAIGDNYLKPYV SEPEVTVT+RT EDE LILA+DGLWDVV+NE AC++VR C                   R+++                   + +DKAC +AS+LLTKLALA
Sbjct:  272 KPDRPDELDRIQEAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVTSEPEVTVTDRTEEDEFLILATDGLWDVVTNEAACTMVRMCLNRKSGRGRRRGETQTPGRRSEEEGKEEEEKVVGSRKNGKRGEITDKACTEASVLLTKLALA 419          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.265e-35
Identity = 78/130 (60.00%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLALA 399
            KPDRPDEL RIEAAGGRVI+W+G RVLGVLAMSR+IGD YLKPYV + PEVTVT R+  DECLILASDGLWDVVSNE AC V ++C R                      +   + C +A+ +LTKLALA
Sbjct:  231 KPDRPDELERIEAAGGRVIFWEGARVLGVLAMSRSIGDAYLKPYVTAVPEVTVTGRSDFDECLILASDGLWDVVSNEAACEVAQSCLR----------------------RGRQRWCAEAAAVLTKLALA 338          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.274e-35
Identity = 84/156 (53.85%), Postives = 93/156 (59.62%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTER-TAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXXQS-------------------------SDKACLDASILLTKLALA 399
            KPDRPDEL RI AAGGRVI+WDG RV G+LAMSRAIGD+YLKPYVI +PEV V ER   EDE LILASDGLWDVVSNE AC+VVR C R+                      S                          DKAC +A++LLTKLALA
Sbjct:  230 KPDRPDELERIHAAGGRVIFWDGARVFGMLAMSRAIGDSYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVRACLRSSGRRERNRSSPTSNLSPRQSSSSGDEAPNDGAPSAAAGSESDEESAAEEDKACAEAAVLLTKLALA 385          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.763e-32
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 1
Query:   10 KPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTC 267
            KPDRPDE+ R+EAAGGRVI W+G R+LGVLA SR+IGD YLKPYVI+EPEVTV +RT +DE LILASDGLWDVVSN+ AC + R C
Sbjct:  258 KPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNC 343          
BLAST of CX288770 vs. ExPASy Swiss-Prot
Match: P2C37_ORYSJ (Probable protein phosphatase 2C 37 OS=Oryza sativa subsp. japonica GN=Os04g0167900 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.677e-31
Identity = 70/135 (51.85%), Postives = 84/135 (62.22%), Query Frame = 1
Query:   13 PDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR-------AQKXXXXXXXXXXXXXXXXXXXQSSDKACLDASILLTKLAL 396
            PDRPDE  RIEA GGRV+Y +GPRV G+LAMSRA+GD YLKP VI EP++T+T RT +DECLILASDG+WDV+SNETA  V R C          +                    Q S+  C  A+ LL +LAL
Sbjct:  321 PDRPDEKARIEAVGGRVVYLNGPRVRGILAMSRALGDKYLKPEVICEPDITITVRTVDDECLILASDGMWDVISNETASDVARQCLEDGSPTSGRRAARSGEAASSSAGAPAAAVGQESEPRCYRAAALLARLAL 455          
The following BLAST results are available for this feature:
BLAST of CX288770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
P2C09_ORYSJ9.477e-4364.14Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]
P2C37_ARATH8.023e-4266.92Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C78_ARATH2.334e-4166.18Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
P2C49_ORYSJ3.982e-4161.64Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C24_ARATH6.792e-4168.46Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
P2C03_ARATH7.509e-4058.78Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C68_ORYSJ3.265e-3560.00Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]
P2C30_ORYSJ7.274e-3553.85Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C08_ORYSJ5.763e-3274.42Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C37_ORYSJ1.677e-3151.85Probable protein phosphatase 2C 37 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC02004C01SK IF1 Citrus clementina cDNA clone C02004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288770 ID=CX288770; Name=CX288770; organism=Citrus clementina; type=EST; length=508bp
GCACGAGATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAAGCCGC
CGGCGGCCGTGTGATTTACTGGGACGGCCCGAGAGTGCTTGGCGTTCTGG
CGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGATATCG
GAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGTTTGAT
TTTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGCGTGCA
GCGTGGTGCGCACGTGCTTCCGAGCTCAGAAGGCGGCGGCTGCAGCTTCA
CCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGCTCTGA
CAAAGCTTGCTTGGACGCGTCAATTTTGTTGACCAAGCTGGCCTTGGCTA
GGCGTAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAAGGAGGAAT
CAAAAGTCAAAAGCAGGGATTAAGTAGTTAATTAAAATGAGTTATATATA
TATATAAT
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