CX288771
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26 Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 359 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G Sbjct: 94 GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 195
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26 Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVN------------FGNSNGVPRG 383 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN FG G RG Sbjct: 97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGSGGFGGGGGTRRG 218
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 115.931 bits (289), Expect = 6.309e-26 Identity = 56/103 (54.37%), Postives = 79/103 (76.70%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 359 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA ++N G Sbjct: 96 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRG 197
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25 Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVN------------FGNSNGVPRG 383 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I + PA +VN FG G RG Sbjct: 97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMTRNRGAGGFGGGGGTRRG 218
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25 Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 386 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I + P + + G PRGG Sbjct: 100 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGITRPRGG 210
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25 Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 386 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I + P + + G PRGG Sbjct: 97 GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGVTRPRGG 207
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25 Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 386 G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I + P + + G PRGG Sbjct: 96 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQIEAQ-RRPIQSQSRGGGVARPRGG 206
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23 Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 3 Query: 51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPR 380 G +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y V LDG+PM I++V + I + PA + GN G+ R Sbjct: 66 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQS---GNRGGMTR 171 The following BLAST results are available for this feature:
BLAST of CX288771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288771 ID=CX288771; Name=CX288771; organism=Citrus clementina; type=EST; length=390bpback to top |