CX288771

Overview
NameCX288771
Unique NameCX288771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10204 contig Ccv1_Contig10204:319..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26
Identity = 57/103 (55.34%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 359
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   94 GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 195          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.699e-26
Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVN------------FGNSNGVPRG 383
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN            FG   G  RG
Sbjct:   97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGSGGFGGGGGTRRG 218          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 6.309e-26
Identity = 56/103 (54.37%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 359
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G
Sbjct:   96 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRG 197          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVN------------FGNSNGVPRG 383
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN            FG   G  RG
Sbjct:   97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMTRNRGAGGFGGGGGTRRG 218          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 386
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   P  + + G     PRGG
Sbjct:  100 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGITRPRGG 210          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 386
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   P  + + G     PRGG
Sbjct:   97 GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGVTRPRGG 207          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.976e-25
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 386
            G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I  +   P  + + G     PRGG
Sbjct:   96 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQIEAQ-RRPIQSQSRGGGVARPRGG 206          
BLAST of CX288771 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 3
Query:   51 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPR 380
            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA +   GN  G+ R
Sbjct:   66 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQS---GNRGGMTR 171          
The following BLAST results are available for this feature:
BLAST of CX288771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU3.699e-2655.34THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN3.699e-2649.59THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE6.309e-2654.37THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN1.406e-2548.78THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR1.836e-2550.89THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA1.836e-2550.89THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA6.976e-2550.00THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
REFP2_MOUSE1.316e-2350.91RNA and export factor-binding protein 2 OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionC02004C02SK IF1 Citrus clementina cDNA clone C02004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288771 ID=CX288771; Name=CX288771; organism=Citrus clementina; type=EST; length=390bp
AGCACGATATGTTTGCAGATCAGGTGAGTGCTTTCCCAGTACAGCAGGCG
GGGCGGGCTTCAGCTATAGAGACTGGAACGAAGCTGTACATATCAAATCT
GGATTACGGTGTCTCTAATGAAGACATCAAGGAACTGTTTTCTGAAGTTG
GTGACTTGAAGCGGTACTCAATCCATTATGATAGAAGTGGGAGATCGAAG
GGAACGGCAGAGGTTGTCTATTCACGACGAGCAGATGCTGTGGCTGCAGT
CAAGAGATACAACAATGTGCAGCTTGATGGGAAGCCAATGAAAATTGAGA
TTGTGGGAACAAACATTGCAACCCGTACTGCAGCTCCAGCTGCTAATGTC
AACTTTGGAAATTCAAATGGTGTTCCTAGAGGTGGACAAG
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