CX288775

Overview
NameCX288775
Unique NameCX288775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288775 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 1.894e-79
Identity = 129/176 (73.30%), Postives = 152/176 (86.36%), Query Frame = 3
Query:   15 GERFEFQDAPSYSEKNWGGAFPXKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALKVGGGPWFNTWK 539
            GERFEF+DAPSYSEKNWGG FP KWFWVQCNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+++GGGPWF TWK
Sbjct:  278 GERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWK 453          
BLAST of CX288775 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.270e-75
Identity = 120/179 (67.04%), Postives = 151/179 (84.36%), Query Frame = 3
Query:    3 IRHEGERFEFQDAPSYSEKNWGGAFPXKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALKVGGGPWFNTWK 539
            I  +GERFEF++APSYSEKNWGG FP KW+W+QCNVF GA+GEV+LTA GGLR++ + D++E+ ++IGIHY+G  +EFVPW G VSW+I  WG W  + EN+TH+VE++ATT   GT LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+MAAL+VGGGPWFN WK
Sbjct:  263 IEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKIGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWK 441          
The following BLAST results are available for this feature:
BLAST of CX288775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TOCC_ARATH1.894e-7973.30Tocopherol cyclase, chloroplastic OS=Arabidopsis t... [more]
TOCC_MAIZE1.270e-7567.04Probable tocopherol cyclase, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionC02004C06SK IF1 Citrus clementina cDNA clone C02004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288775 ID=CX288775; Name=CX288775; organism=Citrus clementina; type=EST; length=539bp
GAATTCGGCACGAGGGCGAAAGGTTTGAATTTCAAGATGCTCCTTCATAT
TCAGAAAAGAATTGGGGTGGAGCCTTCCCTANAAAGTGGTTTTGGGTCCA
GTGTAATGTCTTTGAAGGTGCCACTGGAGAGGTTGCTCTGACAGCAGGTG
GTGGGTTGAGGCAACTACCTGTATTGGACAGCTTTGAAAATGCTGCAATG
ATTGGAATACACTATGATGGAATTTTATATGAGTTTGTGCCATGGAATGG
TGTGGTAAGTTGGGAGATTTCGCAATGGGGTTACTGGTACTTTGCTGCTG
AGAACCAGACACATATGGTTGAGCTAAAGGCAACAACAAAGTATCCAGGC
ACAACATTGCGTGCTCCAACTTCGGAAGCTGGCCTCGCTCCAGCTTGTAA
AGATACTTGTTTTGGTGAGCTAACATTGCAACTATGGGAACGAAGATATG
ATGGCACCAAGGGAAAGATGATATTGGACGTTACAAGTGACATGGCGGCA
TTAAAAGTTGGAGGAGGACCATGGTTCAATACTTGGAAA
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