CX288779

Overview
NameCX288779
Unique NameCX288779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig150 contig Ccv1_Contig150:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.492e-42
Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 274
            TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct:  300 TEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 164.851 bits (416), Expect = 1.786e-40
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = 2
Query:    2 MTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 265
            MTE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKFID +S  GHGRFQT+QEKAK+YGR
Sbjct:  299 MTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 159.458 bits (402), Expect = 7.503e-39
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 2
Query:    2 MTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL 268
            MTE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  299 MTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 3.988e-32
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE+IKLKFIDTSSK GHGRFQT  +K  + G LK
Sbjct:  305 TEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.732e-30
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQT  EK  + G+LK
Sbjct:  302 TDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.315e-30
Identity = 59/92 (64.13%), Postives = 76/92 (82.61%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 280
            TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  302 TEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 7.039e-29
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 280
            TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  302 TEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 2.048e-28
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  305 TSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 274
            TEFD TEK I PMGGF HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  304 TEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of CX288779 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.016e-27
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 2
Query:    5 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 271
            T +D T K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  305 TSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
The following BLAST results are available for this feature:
BLAST of CX288779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ2.492e-4290.0060S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH1.786e-4086.3660S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH7.503e-3982.0260S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME3.988e-3269.6660S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA3.732e-3065.1760S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL8.315e-3064.1360S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR7.039e-2963.0460S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_BOVIN2.048e-2865.1760S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_DICDI5.959e-2862.2260S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3L_HUMAN1.016e-2764.0460S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02004C10SK IF1 Citrus clementina cDNA clone C02004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288779 ID=CX288779; Name=CX288779; organism=Citrus clementina; type=EST; length=487bp
CATGACTGAATTTGACAGGACGGAGAAGGATATCACCCCAATGGGAGGCT
TCCCCCACTATGGTGTAGTCAATGAAGATTACCTGCTGATCAAGGGCTGC
TGTGTTGGACCTAAGAAGCGTGTTGTGACGTTAAGGCAGTCCCTACTGAA
GCAGACGTCTAGGCTTGCATTGGAGGAGATTAAGCTCAAGTTCATTGACA
CATCCTCCAAGTTCGGCCATGGTCGGTTCCAGACAACGCAGGAGAAGGCC
AAGTACTATGGAAGGCTCAAGGCTTGATTTTGGCCAAGTTGAAGAAGAGA
TTGCCTTTGGTTTCAGGGTAGTTTTGAACATCTAAGATTTTTGGTCATTC
TAGTCTCTATTTTGAATTAATATGGCTATGGCTACACTGGCAGTTCTTGG
AAACTTCATTTGTGCATGGTTTCTTTTTTGCGCGTTAATACATCTTACGG
TATTTTTGGGCTTTAAAAAAAAAAAAAAAAAAAAAAA
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