CX288780
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYGM1_ARATH (Glycyl-tRNA synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 3.448e-77 Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 3 Query: 3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYPHHSSESAD 503 KKEHQRVFTPSVIEPSFGIGRIIYCLYEH F TRPSKAGDEQLN+FRFPPLVAPIKCTVFPLVQNQQ+EEVAKVIS L GISHKIDITGTSIGKRYARTDELGVPFAITVDS +SVTIRERDSKDQ+RV++ EAASV+ +V++G+ W+DVW+++PHHSS +AD Sbjct: 562 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIRERDSKDQVRVTLKEAASVVSSVSEGKMTWQDVWATFPHHSSAAAD 728
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_RAT (Glycyl-tRNA synthetase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 4.556e-37 Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 3 Query: 3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479 K H PSVIEPSFG+GRI+Y + EH+F+ R GDEQ F FP +VAP KC+V PL QNQ++ K +S L G+SHK+D + SIG+RYARTDE+GV F IT+D + + T+R+RDS QIR V E SV++ + +G W DV + YP Sbjct: 461 KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGNITWADVEARYP 622
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MOUSE (Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.015e-36 Identity = 78/165 (47.27%), Postives = 104/165 (63.03%), Query Frame = 3 Query: 3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479 K H PSVIEPSFG+GRI+Y + EH+F+ R GDEQ F FP +VAP KC+V PL QNQ++ K +S L G+SHK+D + SIG+RYARTDE+GV F IT+D + + T+R+RDS QIR V E +V++ + +G W DV + YP Sbjct: 553 KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLANGNITWADVEARYP 714
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PONAB (Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.261e-36 Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479 P+VIEPSFG+GRI+Y ++EH+F+ R GDEQ F FP +VAP KC+V PL QNQ++ K +S L G+SHK+D + SIG+RYARTDE+GV F +T+D + + T+R+RDS QIR V E S+++ + +G W DV + YP Sbjct: 572 PNVIEPSFGLGRIMYTVFEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSIVRDLANGNITWADVEARYP 724
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_HUMAN (Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=1 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36 Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479 P+VIEPSFG+GRI+Y ++EH+F+ R GDEQ F FP +VAP KC+V PL QNQ++ K +S L G+SHK+D + SIG+RYARTDE+GV F +T+D + + T+R+RDS QIR + E S+++ + +G W DV + YP Sbjct: 572 PNVIEPSFGLGRIMYTVFEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 724
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BOMMO (Glycyl-tRNA synthetase OS=Bombyx mori PE=1 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 5.037e-36 Identity = 75/164 (45.73%), Postives = 104/164 (63.41%), Query Frame = 3 Query: 3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD-----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479 K H PSVIEPSFG+GRI+YC+ EH+F R GDEQ F PP VAP+KC V PL N +++ + +S L +SHK+D + SIG+RYARTDELGVP+A+TVD +VT+RERDS Q+R+ + + +V++ +++ + W DV YP Sbjct: 507 KTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMRE---GDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYP 667
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_YEAST (Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisiae GN=GRS1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.620e-34 Identity = 77/157 (49.04%), Postives = 99/157 (63.06%), Query Frame = 3 Query: 3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWED 461 K EH R + PSVIEPSFGIGRIIY ++EHSF+ RP D +V FPPLVAP K + PL ++ V ++ +L+ + I KID +G SIGKRYAR DELG PF +T+D S SVT+RERDS Q+R SV+ I+ +T WE+ Sbjct: 495 KVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPE---DNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVHHEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVRGSVENVIKAIRDITYNGASWEE 648
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_SCHPO (Putative glycyl-tRNA synthetase OS=Schizosaccharomyces pombe GN=SPAC3F10.03 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.116e-34 Identity = 72/165 (43.64%), Postives = 105/165 (63.64%), Query Frame = 3 Query: 9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYPHHSS 491 EH R +TP+VIEPSFG+GRI+Y L EH+++TRP D V FP +APIK + PL +N ++ K +S L+ GIS+KID + +IG+RYAR DELG PF +TVD ++T+RERDS Q+R S DE + + ++ +G++ +ED + + S Sbjct: 488 EHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPE---DVNRGVLSFPASIAPIKALIVPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQNETITLRERDSTKQVRGSQDEVIAALVSMVEGKSSFEDALAKFGEFKS 649
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CAEEL (Glycyl-tRNA synthetase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 3.056e-33 Identity = 76/173 (43.93%), Postives = 102/173 (58.96%), Query Frame = 3 Query: 3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS------SVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYPHHSSESAD 503 KK H + TPSVIEPS+GIGRI+Y L EHSF R GDEQ F PLVAPIKC+V P+ N V + L +S+K+D + +IG+RYARTDE+G+PF ITVD S +VTIR ++ QIR+ V E +I + G+ +W D + YP + + + Sbjct: 573 KKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQRE---GDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRLISDLVAGRQQWSDAQAKYPKFEASATE 742
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METKA (Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN=glyS PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.202e-29 Identity = 67/150 (44.67%), Postives = 100/150 (66.67%), Query Frame = 3 Query: 24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWED 461 F P VIEPS+GI RI+YC+ EH+F D + VFRFP +API+ VFPL++ E A+ ++ +L+ G + + D +G SIG+RYAR DE+GVP+ +TVD + +VTIR+RD+ +Q+RV VDE A V++ + DG ++E+ Sbjct: 426 FYPHVIEPSYGIDRILYCVLEHNF--------DPEEGVFRFPAWLAPIEVGVFPLLKRSDMVEYARRVARMLREEGFTVEYDDSG-SIGRRYARADEIGVPYCVTVDHETLEDDTVTIRDRDTTEQVRVEVDELADVLRGLIDGDLEFEE 566 The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 106
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bpback to top |