CX288780

Overview
NameCX288780
Unique NameCX288780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYGM1_ARATH (Glycyl-tRNA synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 3.448e-77
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYPHHSSESAD 503
            KKEHQRVFTPSVIEPSFGIGRIIYCLYEH F TRPSKAGDEQLN+FRFPPLVAPIKCTVFPLVQNQQ+EEVAKVIS  L   GISHKIDITGTSIGKRYARTDELGVPFAITVDS +SVTIRERDSKDQ+RV++ EAASV+ +V++G+  W+DVW+++PHHSS +AD
Sbjct:  562 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIRERDSKDQVRVTLKEAASVVSSVSEGKMTWQDVWATFPHHSSAAAD 728          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_RAT (Glycyl-tRNA synthetase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.556e-37
Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479
            K  H     PSVIEPSFG+GRI+Y + EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F IT+D      +  + T+R+RDS  QIR  V E  SV++ + +G   W DV + YP
Sbjct:  461 KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGNITWADVEARYP 622          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_MOUSE (Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.015e-36
Identity = 78/165 (47.27%), Postives = 104/165 (63.03%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479
            K  H     PSVIEPSFG+GRI+Y + EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F IT+D      +  + T+R+RDS  QIR  V E  +V++ + +G   W DV + YP
Sbjct:  553 KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLANGNITWADVEARYP 714          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_PONAB (Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.261e-36
Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479
            P+VIEPSFG+GRI+Y ++EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F +T+D      +  + T+R+RDS  QIR  V E  S+++ + +G   W DV + YP
Sbjct:  572 PNVIEPSFGLGRIMYTVFEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSIVRDLANGNITWADVEARYP 724          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_HUMAN (Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.857e-36
Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3
Query:   30 PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD------STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479
            P+VIEPSFG+GRI+Y ++EH+F+ R    GDEQ   F FP +VAP KC+V PL QNQ++    K +S  L   G+SHK+D +  SIG+RYARTDE+GV F +T+D      +  + T+R+RDS  QIR  + E  S+++ + +G   W DV + YP
Sbjct:  572 PNVIEPSFGLGRIMYTVFEHTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYP 724          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_BOMMO (Glycyl-tRNA synthetase OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.037e-36
Identity = 75/164 (45.73%), Postives = 104/164 (63.41%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD-----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYP 479
            K  H     PSVIEPSFG+GRI+YC+ EH+F  R    GDEQ   F  PP VAP+KC V PL  N +++   + +S  L    +SHK+D +  SIG+RYARTDELGVP+A+TVD        +VT+RERDS  Q+R+ + +  +V++ +++ +  W DV   YP
Sbjct:  507 KTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMRE---GDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYP 667          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_YEAST (Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisiae GN=GRS1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.620e-34
Identity = 77/157 (49.04%), Postives = 99/157 (63.06%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWED 461
            K EH R + PSVIEPSFGIGRIIY ++EHSF+ RP    D   +V  FPPLVAP K  + PL  ++    V   ++ +L+ + I  KID +G SIGKRYAR DELG PF +T+D  S    SVT+RERDS  Q+R SV+     I+ +T     WE+
Sbjct:  495 KVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPE---DNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVHHEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVRGSVENVIKAIRDITYNGASWEE 648          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_SCHPO (Putative glycyl-tRNA synthetase OS=Schizosaccharomyces pombe GN=SPAC3F10.03 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.116e-34
Identity = 72/165 (43.64%), Postives = 105/165 (63.64%), Query Frame = 3
Query:    9 EHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYPHHSS 491
            EH R +TP+VIEPSFG+GRI+Y L EH+++TRP    D    V  FP  +APIK  + PL +N ++    K +S  L+  GIS+KID +  +IG+RYAR DELG PF +TVD       ++T+RERDS  Q+R S DE  + + ++ +G++ +ED  + +    S
Sbjct:  488 EHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPE---DVNRGVLSFPASIAPIKALIVPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQNETITLRERDSTKQVRGSQDEVIAALVSMVEGKSSFEDALAKFGEFKS 649          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_CAEEL (Glycyl-tRNA synthetase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.056e-33
Identity = 76/173 (43.93%), Postives = 102/173 (58.96%), Query Frame = 3
Query:    3 KKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS------SVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWEDVWSSYPHHSSESAD 503
            KK H +  TPSVIEPS+GIGRI+Y L EHSF  R    GDEQ     F PLVAPIKC+V P+  N     V   +   L    +S+K+D +  +IG+RYARTDE+G+PF ITVD  S      +VTIR  ++  QIR+ V E   +I  +  G+ +W D  + YP   + + +
Sbjct:  573 KKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQRE---GDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRLISDLVAGRQQWSDAQAKYPKFEASATE 742          
BLAST of CX288780 vs. ExPASy Swiss-Prot
Match: SYG_METKA (Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN=glyS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.202e-29
Identity = 67/150 (44.67%), Postives = 100/150 (66.67%), Query Frame = 3
Query:   24 FTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERDSKDQIRVSVDEAASVIKAVTDGQTKWED 461
            F P VIEPS+GI RI+YC+ EH+F        D +  VFRFP  +API+  VFPL++     E A+ ++ +L+  G + + D +G SIG+RYAR DE+GVP+ +TVD  +    +VTIR+RD+ +Q+RV VDE A V++ + DG  ++E+
Sbjct:  426 FYPHVIEPSYGIDRILYCVLEHNF--------DPEEGVFRFPAWLAPIEVGVFPLLKRSDMVEYARRVARMLREEGFTVEYDDSG-SIGRRYARADEIGVPYCVTVDHETLEDDTVTIRDRDTTEQVRVEVDELADVLRGLIDGDLEFEE 566          
The following BLAST results are available for this feature:
BLAST of CX288780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SYGM1_ARATH3.448e-7782.63Glycyl-tRNA synthetase 1, mitochondrial OS=Arabido... [more]
SYG_RAT4.556e-3747.88Glycyl-tRNA synthetase (Fragment) OS=Rattus norveg... [more]
SYG_MOUSE1.015e-3647.27Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=... [more]
SYG_PONAB2.261e-3647.44Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=... [more]
SYG_HUMAN3.857e-3646.79Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=... [more]
SYG_BOMMO5.037e-3645.73Glycyl-tRNA synthetase OS=Bombyx mori PE=1 SV=2[more]
SYG_YEAST1.620e-3449.04Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisi... [more]
SYG_SCHPO2.116e-3443.64Putative glycyl-tRNA synthetase OS=Schizosaccharom... [more]
SYG_CAEEL3.056e-3343.93Glycyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYG_METKA1.202e-2944.67Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN... [more]

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Properties
Property NameValue
Genbank descriptionC02004C11SK IF1 Citrus clementina cDNA clone C02004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288780 ID=CX288780; Name=CX288780; organism=Citrus clementina; type=EST; length=510bp
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAGCAAGGATCAAATCCGTGTCAG
CGTGGATGAGGCAGCATCAGTTATAAAGGCTGTAACCGATGGACAAACGA
AGTGGGAAGATGTGTGGTCAAGTTACCCACATCACTCCTCTGAGTCAGCG
GATGCCTAAA
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