CX288784

Overview
NameCX288784
Unique NameCX288784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig151 contig Ccv1_Contig151:1..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.094e-57
Identity = 107/115 (93.04%), Postives = 115/115 (100.00%), Query Frame = 1
Query:   70 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNR 115          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 4.940e-55
Identity = 102/115 (88.70%), Postives = 113/115 (98.26%), Query Frame = 1
Query:   70 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNR 115          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   70 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNR 115          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.444e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNR 113          
BLAST of CX288784 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.217e-38
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   85 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNR 414
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNR 113          
The following BLAST results are available for this feature:
BLAST of CX288784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RS241_ARATH3.094e-5793.0440S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH4.940e-5588.7040S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT1.444e-3872.7340S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB1.444e-3872.7340S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE1.444e-3872.7340S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU1.444e-3872.7340S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN1.444e-3872.7340S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_DICDI1.444e-3865.2240S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_BOVIN1.444e-3872.7340S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA3.217e-3871.8240S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionC02004D03SK IF1 Citrus clementina cDNA clone C02004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288784 ID=CX288784; Name=CX288784; organism=Citrus clementina; type=EST; length=415bp
TCATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCA
GACTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTA
GGAAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGAT
GTTCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAA
GTTGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTA
AGTTCCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATC
TATGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTAT
CAGGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGG
AAAGGAAGAACAGGG
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