CX288785

Overview
NameCX288785
Unique NameCX288785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:160..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   35 RPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            RP +   + ++G  G IG+HL E++L +  + I  +D+ +D I+ L  +P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  314 RPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   35 RPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            R ++   + ++G  G IG+HL E++L +  ++I  +D+ +D I+ L  +P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  315 RSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG 441          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 46/134 (34.33%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   32 GRPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            GR  +   + ++G  G IG+HL E++L +  +++  LD+ +D I+ L   P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   32 GRPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            GR  +   + ++G  G IG+HL E++L +  + +  LD+ +D I+ L   P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 2
Query:   32 GRPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            GR  +   + ++G  G IG+HL E++L +  +++  LD+ +D I  L   P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG
Sbjct:  313 GRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGK 445
            + ++G  G IG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +++YC + +KR+I  ST EVYG    K
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLTHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDK 442          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.552e-14
Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGK 445
            + ++G  G IG+HL E++L +  ++I  LD+ +D I   LE      + R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C + NKR+I  ST EVYG    K
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLE------SPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDK 442          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.629e-13
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLCEDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430
            + ++G  G IG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437          
The following BLAST results are available for this feature:
BLAST of CX288785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ARNA_PSE141.128e-1434.59Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU21.925e-1433.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS3.283e-1434.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF54.288e-1434.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF7.314e-1434.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ESCF37.314e-1433.59Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP39.552e-1434.35Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL51.629e-1333.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHISS2.128e-1333.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIFL2.128e-1333.33Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02004D04SK IF1 Citrus clementina cDNA clone C02004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288785 ID=CX288785; Name=CX288785; organism=Citrus clementina; type=EST; length=514bp
GGCATGCGCAAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGA
TGACGATATGTATGATCGGCGCCGGCGGCTTGATCGGCTCTCATCTCTGC
GAAAAGATTCTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTA
CAATGACAAGATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCG
GCCGGATCCAGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAA
GGCCTCATCAAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTAC
GCCGGCGGATTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTA
TTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTG
ATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGGAAGCTTTC
TTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAA
GAAGATGCCTCCCC
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