CX288786

Overview
NameCX288786
Unique NameCX288786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9473 contig Ccv1_Contig9473:220..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.490e-86
Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 3
Query:    3 ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 500
            I GGKIIRVEAHPIPEHPRPRRL  RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYK+V PGNP+EDLKLAVNTIGSLVRANALRREMDKL++
Sbjct:  299 ITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 6.259e-85
Identity = 151/166 (90.96%), Postives = 161/166 (96.99%), Query Frame = 3
Query:    3 ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 500
            ILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDVLQKVFYRSNPAREAFVEMC DEYVQKMTFDSYLYKRV PG+PLED+KLAVNTIGSLVRANALRRE++KL++
Sbjct:  302 ILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 6.062e-80
Identity = 140/166 (84.34%), Postives = 157/166 (94.58%), Query Frame = 3
Query:    3 ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 500
            I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+ GS NGTRM++E DLR+YL ++D+ YWPTYKVLDVLQKVFYRSN AREAFVEMCAD+YVQ+MTFDSYLYKRVVPGNPL+D+KLAVNTIGSLVRA ALRREM+K+T+
Sbjct:  298 IEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.242e-58
Identity = 108/155 (69.68%), Postives = 127/155 (81.94%), Query Frame = 3
Query:    9 GGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANAL 473
            GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFAAKS RMCAE I+  S NG R+  E DL++Y+++WDK Y  TY VLD+LQ+VFYR++  REAFVEMC+D  VQK+TFDSYLYK VVP NPL  +K+   TIGSL+R NAL
Sbjct:  251 GGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.794e-19
Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 3
Query:   21 IRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSL 455
            IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  AEA +   ++G       DL+     + K +   +KVL ++Q  +Y S+  RE FV +C D  VQ+MTF+SY+ K++    PL++LK+    +  L
Sbjct:  241 IRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGK----PADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382          
The following BLAST results are available for this feature:
BLAST of CX288786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_TOBAC1.490e-8691.57Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH6.259e-8590.96Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ6.062e-8084.34Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY32.242e-5869.68Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA7.794e-1939.04Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionC02004D05SK IF1 Citrus clementina cDNA clone C02004D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288786 ID=CX288786; Name=CX288786; organism=Citrus clementina; type=EST; length=522bp
AAATCCTTGGTGGCAAGATCATTCGAGTGGAGGCACACCCGATTCCTGAA
CACCCCCGCCCGCGGAGGCTATCGGGGAGAGTGGCATTAGTTGGAGATGC
AGCCGGGTACGTCACGAAATGCTCTGGCGAAGGCATTTACTTTGCGGCAA
AGAGTGGAAGAATGTGTGCGGAGGCCATCATTGAAGGGTCAGAGAATGGA
ACCAGGATGATCGATGAAGGGGACTTGAGGAAGTATTTGGAGAAGTGGGA
TAAGACTTACTGGCCAACTTATAAGGTACTGGATGTATTGCAGAAGGTGT
TTTACCGATCGAATCCAGCGAGGGAAGCATTTGTGGAGATGTGTGCCGAT
GAGTATGTGCAGAAGATGACATTTGATAGCTATTTGTATAAAAGAGTGGT
GCCTGGAAACCCATTGGAGGATTTGAAGTTGGCTGTGAATACTATTGGGA
GCTTGGTGAGAGCTAATGCACTTAGGAGGGAGATGGATAAGCTGACCATC
TGAATATAAGGAGAGGGAAAAA
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