CX288786
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 1.490e-86 Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 3 Query: 3 ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 500 I GGKIIRVEAHPIPEHPRPRRL RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYK+V PGNP+EDLKLAVNTIGSLVRANALRREMDKL++ Sbjct: 299 ITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 6.259e-85 Identity = 151/166 (90.96%), Postives = 161/166 (96.99%), Query Frame = 3 Query: 3 ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 500 ILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDVLQKVFYRSNPAREAFVEMC DEYVQKMTFDSYLYKRV PG+PLED+KLAVNTIGSLVRANALRRE++KL++ Sbjct: 302 ILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 6.062e-80 Identity = 140/166 (84.34%), Postives = 157/166 (94.58%), Query Frame = 3 Query: 3 ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 500 I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+ GS NGTRM++E DLR+YL ++D+ YWPTYKVLDVLQKVFYRSN AREAFVEMCAD+YVQ+MTFDSYLYKRVVPGNPL+D+KLAVNTIGSLVRA ALRREM+K+T+ Sbjct: 298 IEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.242e-58 Identity = 108/155 (69.68%), Postives = 127/155 (81.94%), Query Frame = 3 Query: 9 GGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANAL 473 GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFAAKS RMCAE I+ S NG R+ E DL++Y+++WDK Y TY VLD+LQ+VFYR++ REAFVEMC+D VQK+TFDSYLYK VVP NPL +K+ TIGSL+R NAL Sbjct: 251 GGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405
BLAST of CX288786 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 7.794e-19 Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 3 Query: 21 IRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSL 455 IR E PIP P +G+ V L GDAAG V SGEGIY+A GR AEA + ++G DL+ + K + +KVL ++Q +Y S+ RE FV +C D VQ+MTF+SY+ K++ PL++LK+ + L Sbjct: 241 IRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGK----PADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382 The following BLAST results are available for this feature:
BLAST of CX288786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288786 ID=CX288786; Name=CX288786; organism=Citrus clementina; type=EST; length=522bpback to top |