CX288787

Overview
NameCX288787
Unique NameCX288787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288787 vs. ExPASy Swiss-Prot
Match: ARP9_ARATH (Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.937e-68
Identity = 125/189 (66.14%), Postives = 148/189 (78.31%), Query Frame = 3
Query:    3 IRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLTALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYXDMLEDTWHTDFPRRSDISXNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAI 569
            I TD+L K +D+LMLN++KES+CEI+ GE++ VA VHSYE+GMP   HKT LT+LNVPPMGLFYP LLVP+++P PPR WF DY +MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSILS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAI
Sbjct:  350 INTDVLAKPIDMLMLNQLKESFCEIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQDYENMLEDTWNMDFG----------GGGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAI 528          
BLAST of CX288787 vs. ExPASy Swiss-Prot
Match: ARP9_ORYSJ (Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.726e-60
Identity = 112/188 (59.57%), Postives = 139/188 (73.94%), Query Frame = 3
Query:    6 RTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLTALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYXDMLEDTWHTDFPRRSDISXNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAI 569
            +TD + K +D+LMLN++KESY +I+ G  DAV+VVHSYE     G  KT+L+ALNVPPMGL YP++LVP+ YPPPPRSWF DY DMLEDTW T        S + Y   N G  MW++YP+  T+ KK + IGL EA+ SSILSTGRI+LQRKLFCSIQL+GG A T GL P +E+RVL+ IPSN+ I
Sbjct:  339 QTDPVNKPIDMLMLNKLKESYSQIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGLLYPRVLVPEEYPPPPRSWFQDYDDMLEDTWQT--------SDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIELQRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPI 518          
BLAST of CX288787 vs. ExPASy Swiss-Prot
Match: ARP9_ORYSI (Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 3.845e-60
Identity = 111/188 (59.04%), Postives = 139/188 (73.94%), Query Frame = 3
Query:    6 RTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLTALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYXDMLEDTWHTDFPRRSDISXNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAI 569
            +TD + + +D+LMLN++KESY +I+ G  DAV+VVHSYE     G  KT+L+ALNVPPMGL YP++LVP+ YPPPPRSWF DY DMLEDTW T        S + Y   N G  MW++YP+  T+ KK + IGL EA+ SSILSTGRI+LQRKLFCSIQL+GG A T GL P +E+RVL+ IPSN+ I
Sbjct:  339 QTDPVNRPIDMLMLNKLKESYSQIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGLLYPRVLVPEEYPPPPRSWFQDYDDMLEDTWQT--------SDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIELQRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPI 518          
The following BLAST results are available for this feature:
BLAST of CX288787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARP9_ARATH2.937e-6866.14Actin-related protein 9 OS=Arabidopsis thaliana GN... [more]
ARP9_ORYSJ1.726e-6059.57Actin-related protein 9 OS=Oryza sativa subsp. jap... [more]
ARP9_ORYSI3.845e-6059.04Actin-related protein 9 OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionC02004D06SK IF1 Citrus clementina cDNA clone C02004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288787 ID=CX288787; Name=CX288787; organism=Citrus clementina; type=EST; length=571bp
AAATTCGTACTGACATTTTGACAAAGGCTATGGACTTGCTGATGCTTAAC
CGAATAAAAGAATCCTATTGTGAGATTAAAGAAGGGGAAATTGATGCTGT
TGCTGTAGTTCATTCGTATGAAGATGGCATGCCACCTGGCTCTCATAAAA
CAAGGCTAACCGCTCTTAATGTTCCTCCTATGGGTTTGTTCTACCCGAAG
CTTTTGGTTCCAGATGTGTATCCTCCACCCCCTCGTTCTTGGTTTAACGA
CTATNAGGATATGCTAGAAGATACGTGGCATACAGATTTCCCCAGGAGGT
CTGACATATCANATAACTTCTATCCTGGGATTAATGTTGGATTACCAATG
TGGGAGAGCTACCCAGTTTTGACAACTAAGCCAAAGAAAGAAGAGAAGAT
TGGTCTTGCAGAAGCTGTAACAAGTAGCATTCTTTCAACTGGTCGTATTG
ACCTCCAGAGAAAATTGTTTTGTAGCATACAATTGATTGGTGGAGTGGCT
TTGACTGGTGGCCTCATTCCTGCTGTGGAGGAAAGAGTTTTGCATGCGAT
ACCTTCAAATGAAGCAATTGA
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