CX288816

Overview
NameCX288816
Unique NameCX288816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14413 contig Ccv1_Contig14413:686..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288816 vs. ExPASy Swiss-Prot
Match: Y1669_ARATH (Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.204e-73
Identity = 131/161 (81.37%), Postives = 147/161 (91.30%), Query Frame = 3
Query:   18 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDXEVNELRSMASEIKPVVSFPLENL 500
            +AYE+LKKRGIPLASNQVNYSLIYR PE+ GVKAACDELG+TLIAY PIAQGALTGKYTP+NPP+GPRGRIYT E+L  LQPLLNRIK++GENYSKT TQ+ LNWL+AQ NV+PIPGAKNAEQA EFAGA+GW LTD EV+ELRS+ASEIKPVV FP+E L
Sbjct:  217 DAYERLKKRGIPLASNQVNYSLIYRAPEQTGVKAACDELGVTLIAYSPIAQGALTGKYTPENPPSGPRGRIYTREFLTKLQPLLNRIKQIGENYSKTPTQIALNWLVAQGNVIPIPGAKNAEQAKEFAGAIGWSLTDNEVSELRSLASEIKPVVGFPVEYL 377          
BLAST of CX288816 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 3
Query:   51 PLASNQVNYSLIYRKPE--ENGVKAACDELGITLIAYCPIAQGALTGKY-TPQNPPTG----PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQ-DNVVPIPGAKNAEQAAEFAGALGWRLTDXEVNELR 449
            P+++ QV YS    + E  E GV  AC E  IT++ Y P+ +G LTG Y +P + P G       R     + +NL+ L+ +I+++    + T  Q+ L WLLAQ D+++PIPG K  +   E  GAL  +L+D  V E+R
Sbjct:  171 PVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGFLTGAYKSPDDFPEGDFRRKAPRYQKENFYKNLE-LVTKIEKIATANNITPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIR 310          
BLAST of CX288816 vs. ExPASy Swiss-Prot
Match: Y2320_MYCBO (Uncharacterized oxidoreductase Mb2320 OS=Mycobacterium bovis GN=Mb2320 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   45 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR--IYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDXEVNELRSMASEIKPV 476
            G P+ SNQV++SL +    E+ V  A  E  I +IAY P+AQG L GKY  +N P G R    ++  E LR ++PLL  ++ +  +      QV L WL++   VV IPGA + EQ      A    L+    + L   A   +PV
Sbjct:  162 GRPVVSNQVHFSLAHPDALEDLVPFAELENRI-VIAYSPLAQGLLGGKYGLENRPGGVRALNPLFGTENLRRIEPLLATLRAIAVDVDAKPAQVALAWLISLPGVVAIPGASSVEQLEFNVAAADIELSAQSRDALTDAARAFRPV 306          
BLAST of CX288816 vs. ExPASy Swiss-Prot
Match: Y2298_MYCTU (Uncharacterized oxidoreductase Rv2298/MT2355 OS=Mycobacterium tuberculosis GN=Rv2298 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   45 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR--IYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDXEVNELRSMASEIKPV 476
            G P+ SNQV++SL +    E+ V  A  E  I +IAY P+AQG L GKY  +N P G R    ++  E LR ++PLL  ++ +  +      QV L WL++   VV IPGA + EQ      A    L+    + L   A   +PV
Sbjct:  162 GRPVVSNQVHFSLAHPDALEDLVPFAELENRI-VIAYSPLAQGLLGGKYGLENRPGGVRALNPLFGTENLRRIEPLLATLRAIAVDVDAKPAQVALAWLISLPGVVAIPGASSVEQLEFNVAAADIELSAQSRDALTDAARAFRPV 306          
The following BLAST results are available for this feature:
BLAST of CX288816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1669_ARATH1.204e-7381.37Uncharacterized oxidoreductase At1g06690, chloropl... [more]
YAKC_SCHPO8.207e-1436.88Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
Y2320_MYCBO8.207e-1436.30Uncharacterized oxidoreductase Mb2320 OS=Mycobacte... [more]
Y2298_MYCTU8.207e-1436.30Uncharacterized oxidoreductase Rv2298/MT2355 OS=My... [more]
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Properties
Property NameValue
Genbank descriptionC02004G02SK IF1 Citrus clementina cDNA clone C02004G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288816 ID=CX288816; Name=CX288816; organism=Citrus clementina; type=EST; length=616bp
GAATTCGGCACGAGGGCAATGCTTACGAAAAGCTTAAAAAGAGAGGAATT
CCATTAGCTTCAAACCAAGTGAACTATAGCCTCATATACAGAAAACCAGA
AGAGAATGGTGTGAAGGCTGCCTGTGATGAACTTGGGATCACTTTAATTG
CATATTGTCCTATTGCTCAAGGTGCTCTCACTGGAAAGTATACACCACAG
AATCCACCAACTGGGCCTCGAGGCCGGATCTACACTGCCGAGTATCTAAG
AAATCTCCAACCACTGTTGAACAGAATCAAGGAACTAGGAGAGAACTACA
GCAAAACTTCCACACAGGTAGGCCTCAACTGGCTATTAGCCCAGGACAAT
GTTGTGCCAATCCCAGGAGCCAAAAATGCAGAACAGGCTGCAGAATTCGC
GGGTGCATTGGGATGGAGACTCACCGATNAAGAGGTGAACGAGCTGCGCT
CAATGGCTTCAGAGATAAAACCTGTCGTCAGTTTCCCTCTGGAGAATTTG
TAGATTTTGTCATTTGACACAAACAAATTTATACAAGAAGCAGTTGAATT
ATGCACGAGTTCTGAAATTCAATCACAGTTGTAGACAGCTTTACACTTCG
TTGATGGTAAATTATC
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