CX288817

Overview
NameCX288817
Unique NameCX288817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288817 vs. ExPASy Swiss-Prot
Match: Y2162_ARATH (Uncharacterized protein At2g41620 OS=Arabidopsis thaliana GN=At2g41620 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 3.350e-59
Identity = 110/153 (71.90%), Postives = 136/153 (88.89%), Query Frame = 3
Query:   57 SRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSXAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLNALREVAKLPFLPFDPRVPD 515
            +RG+GEEG+LGR+  D + RQQFL+EAA QCQEAGLYDKSIELQKRVGAFS AL+TINKCLS AI +++RGRLDGES+T+ LI +GN+ILE  KYYPEVSL ERE+V+EQ+T+LR+LEAILS+HK+ R G++L+ALRE+AKLPFL  DPR+PD
Sbjct:  640 ARGSGEEGQLGRFFPDSRLRQQFLVEAAHQCQEAGLYDKSIELQKRVGAFSAALETINKCLSEAICSLARGRLDGESRTSGLILAGNDILETYKYYPEVSLQERERVMEQETILRELEAILSIHKLGRLGNHLDALREIAKLPFLHLDPRMPD 792          
The following BLAST results are available for this feature:
BLAST of CX288817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2162_ARATH3.350e-5971.90Uncharacterized protein At2g41620 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02004G03SK IF1 Citrus clementina cDNA clone C02004G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288817 ID=CX288817; Name=CX288817; organism=Citrus clementina; type=EST; length=517bp
TTCGGCACGAGGCTGAACTATTGTTACGAGATGGTGGAATTTATCTTTTA
CTTGGTTCAAGAGGAGCTGGGGAGGAAGGTGAATTGGGACGATATATAAC
TGATCTCAAAGCTAGACAACAGTTTTTACTTGAAGCTGCTGGGCAGTGTC
AGGAAGCTGGGCTTTATGATAAATCTATAGAACTTCAGAAGAGAGTTGGA
GCCTTCTCAATGGCATTGGATACAATTAACAAGTGTCTATCANAAGCAAT
TTTTGCCATGTCCCGTGGTAGGTTGGATGGTGAAAGTCAGACTGCTAGCC
TAATTCATTCTGGCAACGAAATTTTGGAGATGGAAAAATATTATCCTGAA
GTCAGTCTTCATGAACGAGAGCAAGTTCTGGAGCAACAGACTGTATTGAG
ACAGCTTGAGGCAATATTGTCTGTCCATAAAATGGCAAGGTCAGGCCATT
ATTTAAATGCTTTGAGGGAGGTCGCCAAACTCCCATTTCTTCCATTTGAT
CCACGAGTTCCAGATGC
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