CX288820

Overview
NameCX288820
Unique NameCX288820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 3.037e-90
Identity = 164/176 (93.18%), Postives = 172/176 (97.73%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 529
            FQ+YLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR E + VTM HF++AIDRVIGGLEKKN+VISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLL+TKEQLFDMTCMTLGGRAAEQVL+G+ISTGAQNDLEKVTKMTYAQVAV
Sbjct:  507 FQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAV 682          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 5.180e-90
Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 529
            F++YLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR E + VTM HFE+AIDRVIGGLEKKN+VISKLERRTVAYHESGHAV GWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLL+TKEQLFDMTCMTLGGRAAEQVL+GKISTGAQNDLEKVTKMTYAQVAV
Sbjct:  501 FKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQNDLEKVTKMTYAQVAV 676          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.154e-89
Identity = 160/176 (90.91%), Postives = 174/176 (98.86%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 529
            F++YLKK+KLD+EPS+YSQRLAALTPGFAGADIANVCNEAALIAAR E +Q+TM+HFE+AIDR+IGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLL+TKEQLFDMTCMTLGGRAAE+VL+G+ISTGAQNDLEKVTKMTYAQVAV
Sbjct:  515 FRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQITMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTKMTYAQVAV 690          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 9.769e-89
Identity = 160/176 (90.91%), Postives = 172/176 (97.73%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAV 529
            F++YLKK+KLD EPS+YSQRLAALTPGFAGADIANVCNEAALIAAR E + +TM+HFE+AIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN+NLL+TKEQLFDMTCMTLGGRAAE+VL+GKISTGAQNDLEKVTKMTYAQVAV
Sbjct:  500 FRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEGTLITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDNLLMTKEQLFDMTCMTLGGRAAEEVLIGKISTGAQNDLEKVTKMTYAQVAV 675          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 3.065e-58
Identity = 108/176 (61.36%), Postives = 141/176 (80.11%), Query Frame = 2
Query:    2 FQVYLKKIKLDH--EPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+V+L+ +KLD   E    +++LA+LTPGF+GAD+ANVCNEAALIAAR  +  +  +HFE AI+RVIGGLEKK +V+   E++TVAYHE+GHAVAGW+LEHA+PLLKV+I+PRG   LG+AQY+P E  L TKEQL D  CMTLGGR +E++  G+I+TGAQ+DL KVT+  YAQ+
Sbjct:  487 FKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRG-KGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQI 661          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.828e-58
Identity = 108/176 (61.36%), Postives = 141/176 (80.11%), Query Frame = 2
Query:    2 FQVYLKKIKLDH--EPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+V+L+ +KLD   E    +++LA+LTPGF+GAD+ANVCNEAALIAAR  +  +  +HFE AI+RVIGGLEKK +V+   E++TVAYHE+GHAVAGW+LEHA+PLLKV+I+PRG   LG+AQY+P E  L TKEQL D  CMTLGGR +E++  G+I+TGAQ+DL KVT+  YAQ+
Sbjct:  486 FKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRG-KGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQI 660          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.828e-58
Identity = 107/176 (60.80%), Postives = 141/176 (80.11%), Query Frame = 2
Query:    2 FQVYLKKIKLDH--EPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+V+L+ +KLD   E    +++LA+LTPGF+GAD+ANVCNEAALIAAR  +  +  +HFE AI+RVIGGLEKK +V+   E++TVAYHE+GHAVAGW+LEHA+PLLKV+I+PRG   LG+AQY+P E  L T+EQL D  CMTLGGR +E++  G+I+TGAQ+DL KVT+  YAQ+
Sbjct:  488 FKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRG-KGLGYAQYLPREQYLYTREQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQI 662          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.987e-57
Identity = 112/176 (63.64%), Postives = 137/176 (77.84%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSY--YSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+V+L+ +KLD   S    S++LAALTPGF GADI+NVCNEAALIAAR  +  V   HFE AI+RVIGGLEKK +V+   E+ TVAYHE+GHAV GWFLEHA+PLLKV+I+PRG   LG+AQY+P E  L T+EQLFD  CM LGGR AEQ+  G+I+TGAQ+DL KVT+  YAQ+
Sbjct:  479 FKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRG-KGLGYAQYLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQI 653          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.877e-53
Identity = 99/174 (56.90%), Postives = 132/174 (75.86%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+ +LK +KL    S+YSQRLA LTPGF+GADIAN+CNEAAL AAR  ++ V   +FE A++RVI G  KK+K++SK E+R VA+HESGHA+ GW LEH E ++KV+I PR  AALGF+Q +P +  L TKEQLF+  CM LGGRAAE +   ++++GAQ+DL KVT++ Y+ V
Sbjct:  489 FEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMV 662          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 5.599e-52
Identity = 96/174 (55.17%), Postives = 132/174 (75.86%), Query Frame = 2
Query:    2 FQVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            F+ +LK +KL    ++YSQRLA LTPGF+GADIAN+CNEAAL AAR  ++ V   +FE A++RV+ G  KK+K++SK E++ VA+HESGHA+ GW LEH E ++KV+I PR  AALGFAQ +P +  L TKEQLF+  CM LGGRA+E +   ++++GAQ+DL KVT++ Y+ V
Sbjct:  489 FEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFNEVTSGAQDDLRKVTRIAYSMV 662          
The following BLAST results are available for this feature:
BLAST of CX288820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSHA_ARATH3.037e-9093.18Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH5.180e-9093.18Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH8_ORYSJ1.154e-8990.91Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH3_ORYSJ9.769e-8990.91Cell division protease ftsH homolog 3, mitochondri... [more]
AFG32_HUMAN3.065e-5861.36AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG32_MOUSE6.828e-5861.36AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_BOVIN6.828e-5860.80AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
AFG31_MOUSE1.987e-5763.64AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
SPG7_MOUSE3.877e-5356.90Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_HUMAN5.599e-5255.17Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02004G06SK IF1 Citrus clementina cDNA clone C02004G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288820 ID=CX288820; Name=CX288820; organism=Citrus clementina; type=EST; length=531bp
ATTCCAAGTTTATTTGAAAAAGATCAAACTTGATCACGAACCATCTTATT
ATTCTCAGAGGCTTGCAGCACTCACTCCTGGATTTGCTGGAGCAGACATT
GCAAATGTTTGCAATGAAGCTGCTTTGATTGCTGCAAGGGGTGAAAATTC
ACAAGTCACAATGGAACATTTTGAGGCAGCTATAGATAGGGTCATTGGTG
GTCTGGAGAAGAAGAATAAGGTTATAAGCAAGTTGGAGCGCCGGACAGTT
GCTTACCATGAATCCGGCCATGCTGTTGCTGGATGGTTTCTGGAACATGC
AGAACCCTTGTTAAAAGTGACAATTGTTCCTCGAGGTACAGCTGCACTTG
GATTTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCAG
CTTTTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGAGCAGGT
TTTGTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTAA
CAAAGATGACCTATGCCCAAGTTGCCGTGTA
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