CX288822

Overview
NameCX288822
Unique NameCX288822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:177..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.301e-46
Identity = 82/135 (60.74%), Postives = 105/135 (77.78%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+  L +SDNYNR+GFGHKEE ++ M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWITNEIIHNP+VN RL  MAV  IPVE G+K F VV  GDVV+LPAFG
Sbjct:    2 DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWITNEIIHNPSVNQRLRSMAVGFIPVENGQKDFTVVESGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.886e-43
Identity = 80/135 (59.26%), Postives = 104/135 (77.04%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L +S+NY+R+GFGH+ E +  MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWITNEIIHNP+VN RL EM V  I V  G K F VV  GDVV+LPAFG
Sbjct:    2 DTKAFKRSLQQSNNYHRKGFGHETEVMGTMNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWITNEIIHNPSVNQRLLEMNVGFIEVINGSKDFSVVEAGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 79/135 (58.52%), Postives = 102/135 (75.56%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L  S+NY R+GFGHK+E   +M  EY S +I+++++N +E T G+V + LAE++GFCWGVERAV +AYE RK FP EKIW+TNEIIHNP+VNNRL+EM V  I V +G K F  V  GDVV+LPAFG
Sbjct:    2 DTKAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEIIHNPSVNNRLKEMNVHFIEVVDGDKDFSGVANGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.922e-42
Identity = 74/136 (54.41%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVE-EGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L +S+ Y+R+GFGH+EE   L+  EY S +I++++ NG+    G+V + LAE++GFCWGVERA+ +AYE R+QFP+E+IWITNEIIHNP+VN  L +M V+ IPV+ +G+K F VV + DVV+LPAFG
Sbjct:    2 DTKAFKRSLHKSEQYHRKGFGHEEEVTNLLQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWITNEIIHNPSVNKNLRDMKVEFIPVQPDGQKDFTVVGQNDVVILPAFG 137          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.035e-41
Identity = 75/135 (55.56%), Postives = 100/135 (74.07%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+  L +SD YNR+GFG   +    +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWITNEIIHNP+VN  L EM+V+ IP E G+K F VV++GDVV+LPAFG
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.035e-41
Identity = 75/135 (55.56%), Postives = 100/135 (74.07%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+  L +SD YNR+GFG   +    +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWITNEIIHNP+VN  L EM+V+ IP E G+K F VV++GDVV+LPAFG
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.765e-41
Identity = 71/135 (52.59%), Postives = 105/135 (77.78%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L +S+NY+R+GFG ++E + +MN EY S +I++++ N +  T G+V ++LAE++GFCWGVERAV ++YE R+ FP ++IW+TNE+IHNP+VN RL +M V+ IPV E +K F VV + DVV+LPAFG
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQEDEAMGVMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEVIHNPSVNQRLRDMKVEFIPVIEDQKDFSVVERDDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.305e-41
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+ +L  S+ YNRRGFG  EE    + Q Y S++I+ ++ENG+E   G V ++LAE++GFCWGVERAV IAYE R+ +P E+IWITNEIIHNP+VN  L EM V  IPVEEG K F  V  GDVV+LPAFG
Sbjct:    2 DTRAFKRSLHHSERYNRRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEIIHNPSVNAHLVEMNVLFIPVEEGVKDFSGVESGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.010e-41
Identity = 75/135 (55.56%), Postives = 101/135 (74.81%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+ +L  S+NY+R+GFGH EE  + +  EY S +I++++ NG+ +  G+V ++LAE++GFCWGVERAV +AYE R  FP E+IWITNEIIHNP+VN RL +MAV+ IPV  G K F  V  GDVV+LPAFG
Sbjct:    2 DTRAFKRSLHSSENYHRKGFGHGEEVNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEIIHNPSVNERLRQMAVEFIPVVNGVKDFSGVRPGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.932e-41
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ + G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN+ L EM VQ IPVE+G K F  V  GDVV+LPAFG
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFG 136          
The following BLAST results are available for this feature:
BLAST of CX288822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_MICAN5.301e-4660.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA51.886e-4359.264-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP24.201e-4358.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM17.922e-4254.414-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP61.035e-4155.564-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE71.035e-4155.564-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP71.765e-4152.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR32.305e-4157.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB3.010e-4155.564-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX3.932e-4156.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC02004G08SK IF1 Citrus clementina cDNA clone C02004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288822 ID=CX288822; Name=CX288822; organism=Citrus clementina; type=EST; length=501bp
ATTCGGCACGAGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTC
CGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACG
CGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGA
GGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACAC
AAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGG
GAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTT
GAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGAGGA
GAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATAATC
GGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAGAAG
CAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGG
G
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