CX288825

Overview
NameCX288825
Unique NameCX288825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:7..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288825 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 55/160 (34.38%), Postives = 90/160 (56.25%), Query Frame = 2
Query:   56 ATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIG 529
            AT +  L+ A  S S      ++   P+LD  G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G
Sbjct:    4 ATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG 160          
BLAST of CX288825 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-19
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 2
Query:   47 ISLATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYKIV 556
            +SL+      +LA A+N LL     S P P+LD+ G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V
Sbjct:    7 LSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLV 175          
BLAST of CX288825 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  128 PEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGIYK 550
            P+P++D+ G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P  YK
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYK 138          
The following BLAST results are available for this feature:
BLAST of CX288825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.946e-2234.3821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.075e-1933.53Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA4.672e-1536.11Latex serine proteinase inhibitor OS=Carica papaya... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02004G11SK IF1 Citrus clementina cDNA clone C02004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288825 ID=CX288825; Name=CX288825; organism=Citrus clementina; type=EST; length=558bp
ATTCGGCACGAGGCAGATATATAGCTTTGAAAACAACAAAATGAAGATTT
CATTAGCAACAACACTCTCTTTCCTTATCCTTGCCTTGGCCTCAAACTCT
TTGTTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGATGTCCA
CGGAAACAAGGTCGAATCCACCCTTAAGTACTACATAGTCTCAGCCATCT
GGGGAGCTGGCGGTGGTGGAGTTAGCCTACACGGTGGCAGAAACGGATAT
TGTCCGCTGGACGTTATCCAGTTACCTTCTGATATGCAAAATGGAATCGA
ATTAACACTGTCACCGTATAACAATTCTACAATTGTCCGAGAATCCACTG
ATCTCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTATTGTAAC
GAACAACCGTTGTGGAAAGTTGATAATTATGACGCGGCATCAGGCAAATG
GTTTATAACAACCGGGGGACTTGATGGTCACCCTGGAGCTGAAACTTTGC
TAAATTGGTTTAAGCTTGAGAAAATTGGAAATTTTCCAGGTATATACAAA
ATCGTTCA
back to top