CX288828

Overview
NameCX288828
Unique NameCX288828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14939 contig Ccv1_Contig14939:31..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: FHIT_DICDI (Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium discoideum GN=fhit PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.564e-34
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  165 FGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            FGP+ I   E+F++T LS+A+VNL+P+LPGHVLVC +R   R  DLT +E TDLWL+AQ++   +E +  G   TFAIQDG  AGQTV HVHIH++PRK  DFE ND+IY+ I
Sbjct:    6 FGPWLIRQSEIFFTTELSFALVNLKPVLPGHVLVCPKRIVPRVKDLTKEEFTDLWLSAQRISSVVEEHFNGDGITFAIQDGKNAGQTVEHVHIHIIPRKKFDFENNDQIYNEI 118          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: FHIT_BOVIN (Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=FHIT PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.037e-33
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  159 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            F FG + I    VF  T LS+A+VN +P++PGHVLVC  R  +RF D++ +E  DL+  AQ+VG  +E + +G+S TF++QDGPEAGQTV HVH+H+LPRKAGDF +ND IYDA+
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDMSPEEVADLFQAAQRVGTVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHILPRKAGDFHRNDSIYDAL 117          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: FHIT_MOUSE (Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN=Fhit PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  159 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            F FG + I    VF  T LS+A+VN +P++PGHVLVC  R  +RF DL  DE  DL+   Q+VG  +E + +G+S TF++QDGPEAGQTV HVH+HVLPRKAGDF +ND IYD +
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDLHPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHVLPRKAGDFPRNDNIYDEL 117          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: FHIT_HUMAN (Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN=FHIT PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  159 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            F FG + I    VF  T LS+A+VN +P++PGHVLVC  R  +RF DL  DE  DL+ T Q+VG  +E +  G+S TF++QDGPEAGQTV HVH+HVLPRKAGDF +ND IY+ +
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEEL 117          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: FHIT_RAT (Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegicus GN=Fhit PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.956e-32
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  159 FTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            F FG + I    VF  T LS+A+VN +P++PGHVL+C  R  +RF DL  DE  DL+   Q+VG  +E + +G+S TF++QDGPEAGQTV HVH+H+LPRK+GDF +ND IYD +
Sbjct:    3 FKFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLMCPLRPVERFRDLRPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKSGDFRRNDNIYDEL 117          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: NFT1_CAEEL (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.452e-29
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  144 SSTTQFTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            S T    F  + I A  +FYSTP S+  VNL+P+  GHVLV  +R   R  DLT  ET DL++ A+KV   LE +H  +STT  +QDG +AGQTVPHVHIH+LPR+AGDF  N EIY  +
Sbjct:  294 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDN-EIYQKL 412          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: APH1_SCHPO (Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Schizosaccharomyces pombe GN=aph1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  156 QFTFGPYKIDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            Q  F  + + + +VFY T LS A VNL+P+LPGHVLV  +R   R  DLT  E TDL+ + +KV + +E     S++   IQDG +AGQTVPHVH+H++PRK  DF +ND +Y  +
Sbjct:    4 QLYFSKFPVGS-QVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKADFSENDLVYSEL 118          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: NFT1_DROME (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  180 IDAKEVFYSTPLSYAMVNLRPLLPGHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIY 494
            +D + +FY +   +A  NLR ++ GHVLV ++R   R   L   E  D++ T   V + LE  ++ +S T  +QDG +AGQTVPHVH H++PR+ GDF  ND+IY
Sbjct:  323 VDKRTIFYESEHCFAFTNLRCVVKGHVLVSTKRVTPRLCGLDCAEMADMFTTVCLVQRLLEKIYQTTSATVTVQDGAQAGQTVPHVHFHIMPRRLGDFGHNDQIY 427          
BLAST of CX288828 vs. ExPASy Swiss-Prot
Match: HNT2_YEAST (Hit family protein 2 OS=Saccharomyces cerevisiae GN=HNT2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  189 KEVFYSTPLSYAMVNLRPLLPGHVLVCS-RREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAI 503
            ++VFY +  +YA+VNL+P++PGHVL+   R      +DLT  E+ D + T Q + + ++  +K  S   AIQDGPEAGQ+VPH+H H++PR   +    D IYD +
Sbjct:   14 EQVFYKSKYTYALVNLKPIVPGHVLIVPLRTTVLNLSDLTMPESQDYFKTLQLIHRFIKWQYKADSINVAIQDGPEAGQSVPHLHTHIIPRYKIN-NVGDLIYDKL 118          
The following BLAST results are available for this feature:
BLAST of CX288828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FHIT_DICDI3.564e-3457.52Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium d... [more]
FHIT_BOVIN1.037e-3355.65Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=F... [more]
FHIT_MOUSE5.147e-3356.52Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN... [more]
FHIT_HUMAN5.147e-3356.52Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN... [more]
FHIT_RAT1.956e-3253.91Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegic... [more]
NFT1_CAEEL3.452e-2952.50Nitrilase and fragile histidine triad fusion prote... [more]
APH1_SCHPO7.959e-2647.41Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] ... [more]
NFT1_DROME1.007e-2042.86Nitrilase and fragile histidine triad fusion prote... [more]
HNT2_YEAST6.108e-1842.45Hit family protein 2 OS=Saccharomyces cerevisiae G... [more]
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Properties
Property NameValue
Genbank descriptionC02004H03SK IF1 Citrus clementina cDNA clone C02004H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288828 ID=CX288828; Name=CX288828; organism=Citrus clementina; type=EST; length=504bp
GAATTCGGCACGAGGCTACAACTACTGCTAGCAGGTGTTCTTCTTGGTAC
CTCTCGCATTCATTAAAACGGTGCCGCTCAATCTCCAGCACCACCATCAC
TCTCCCCAAGGCAAGTAAAATCAAATCGGCCTCAGCTCAGATGTCGTCGA
CGACTCAGTTTACGTTCGGGCCTTACAAAATTGATGCGAAGGAAGTGTTC
TATAGCACTCCTCTCTCCTACGCCATGGTCAACCTGCGCCCGTTGCTTCC
TGGTCATGTACTTGTCTGCTCGAGGCGTGAAGCAAAGCGCTTTGCTGATC
TTACAGCTGATGAGACTACTGATTTATGGCTCACAGCCCAAAAGGTTGGC
AAACAGCTCGAAAGCTACCACAAGGGTTCATCAACAACATTTGCCATCCA
AGATGGGCCTGAAGCTGGACAGACAGTACCCCATGTTCACATCCATGTTC
TCCCGCGCAAAGCTGGTGACTTTGAAAAAAATGATGAGATTTATGATGCA
ATAG
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