CX288829

Overview
NameCX288829
Unique NameCX288829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3976 contig Ccv1_Contig3976:1295..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288829 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 3.824e-58
Identity = 117/179 (65.36%), Postives = 135/179 (75.42%), Query Frame = 3
Query:    6 SRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRS-----TPDAAXTRNQLQADVSLIKENEALRSELTRMKLYISDMQKGNN--QAXXXXXXXXXXXXXXXXXFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAM 521
            +RK DDDLYRAIDI+LKAHPNLDEIEREK+CSSMDPLKLSY+AR+HASQNKRLPV IVLHALYYDQLKLRSG+           P+A  TR+QLQAD +L KENEALRSEL +MK+Y+SDMQK  N   A                 FFSS+SK  GKLNPFK+GSKDTS+ID+D+  +
Sbjct:  402 ARKSDDDLYRAIDIFLKAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYYDQLKLRSGVAEQEERAVVVLPEALKTRSQLQADTTLAKENEALRSELMKMKMYVSDMQKNKNGAGASSSNSSSLVSSKKSKHTFFSSVSKKLGKLNPFKNGSKDTSHIDEDLGGV 580          
BLAST of CX288829 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.882e-21
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = 3
Query:    6 SRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAXTRNQLQA-----------------DVSLIKENEALRSELTRMKLYISDMQKGNNQAXXXXXXXXXXXXXXXXXFFSSMSKTFGKLNPFKHGSKDTSN 497
            +R + D LYRAID+YLKAH  L + +++K+   +D  KLS EA  HA+QN+RLP+Q ++  LY++QLKLRS L +  S  +    + Q Q+                   SL +EN  L+ EL R+++ ++D++K +                    F SS SK  GKL+ F H S   S+
Sbjct:  417 ARTLHDGLYRAIDLYLKAHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSATMSPKDNYASLRRENRELKLELARLRMRLNDLEKEH------ICMKRDMQRSHSRKFMSSFSKKMGKLSFFGHSSSRGSS 591          
BLAST of CX288829 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    6 SRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGL 224
            +R +DD LYRAIDIYLK HP L E ERE +C  +D  KLS EA  HA+QN+RLP++I++  L+++QL+LR+ +
Sbjct:  441 ARLLDDGLYRAIDIYLKHHPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSV 513          
BLAST of CX288829 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.729e-16
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 3
Query:    6 SRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDN 230
            +R  DD LYRAID YLKAHP L E ER+++C  MD  KLS +A +HA+QN+RLP+++V+  L+ +Q+K+ + L N
Sbjct:  537 ARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALAN 611          
BLAST of CX288829 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.066e-16
Identity = 37/73 (50.68%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    6 SRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGL 224
            +R  DD LYRA+D YLKAHP L E ER+++C  MD  KLS++A +HA+QN+RLP+++V+  L+ +Q+K+ + L
Sbjct:  540 ARACDDGLYRAVDSYLKAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNAL 612          
The following BLAST results are available for this feature:
BLAST of CX288829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT2_ARATH3.824e-5865.36Root phototropism protein 2 OS=Arabidopsis thalian... [more]
Y5880_ARATH4.882e-2134.81BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
Y1044_ARATH2.123e-1654.79BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH4.729e-1652.00Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ8.066e-1650.68Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC02004H05SK IF1 Citrus clementina cDNA clone C02004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288829 ID=CX288829; Name=CX288829; organism=Citrus clementina; type=EST; length=523bp
AAGGTTCACGTAAAGTTGACGATGATCTCTACCGAGCCATTGATATCTAT
CTTAAGGCTCATCCAAATCTCGACGAAATAGAGCGGGAGAAAATCTGCAG
TTCAATGGACCCACTAAAACTATCTTACGAAGCTCGAGTTCACGCATCAC
AGAACAAGCGATTGCCAGTGCAGATTGTATTGCATGCCTTGTATTACGAC
CAGCTAAAGCTAAGAAGCGGACTGGACAACGATCGGAGCACGCCGGATGC
CGCANCAACAAGGAATCAATTGCAGGCAGACGTATCGCTGATTAAAGAAA
ACGAAGCATTGAGGTCAGAGCTGACGAGGATGAAGCTTTATATCTCGGAT
ATGCAGAAAGGTAATAATCAAGCAGGGACAGGTAGCTCTAGTAAGAGTGG
TACTAGTGGGCATAAAAAGCACACTTTCTTCTCATCAATGTCGAAGACAT
TTGGCAAATTGAATCCCTTTAAGCATGGGTCTAAGGATACTTCTAATATT
GATGATGACGTTGCTGCTATGGA
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