CX288831

Overview
NameCX288831
Unique NameCX288831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:520..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 3.327e-83
Identity = 140/171 (81.87%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDP AKKPEDWD+KE+I DPEDKKPEGYDDIP+EI                     PTIPNPEYKGPWKPKKIKNPNYKGKWKAP+IDNPDFKDDPDLYV+P LKYVG+ELWQVKSGT+FDN
Sbjct:  168 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPSAKKPEDWDEKEFIDDPEDKKPEGYDDIPEEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKPKKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPKLKYVGVELWQVKSGTLFDN 338          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 7.412e-83
Identity = 138/171 (80.70%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            EVPCETDQLTHVYT ++RPDATYSILIDNVEKQ+GSLY+DWDLLPPK IKDP+AKKPEDWD+KEYIPDPEDKKPEGYDDIPKEI                     PTI NPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDP++YVYPNLKYVGIELWQVKSGT+FDN
Sbjct:  161 EVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPPKKIKDPEAKKPEDWDEKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIANPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPEIYVYPNLKYVGIELWQVKSGTLFDN 331          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.070e-81
Identity = 136/171 (79.53%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            +VPCETDQLTHVYTFILRPDA+YSILIDNVEKQSGS+Y+DWD+LPPK IKDP+AKKPEDW+DKEYIPDPEDKKPEGYDDIPKEI                     PTIPNP+YKG WKPKKIKNPN+KGKWKAPMIDNPDFKDDPD+YV+P LKYVGIELWQVKSGTMFDN
Sbjct:  163 DVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPPKQIKDPEAKKPEDWEDKEYIPDPEDKKPEGYDDIPKEITDPEAKKPEDWDDEEDGEWTAPTIPNPDYKGEWKPKKIKNPNFKGKWKAPMIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTMFDN 333          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 6.938e-81
Identity = 135/171 (78.95%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            +VPCETDQLTHVYTFI+RPDATYSILIDN+EKQ+GSLYSDWDLLP K IKDP+AKKPEDW+D+EYIPDPEDKKPEGYDDIPKEI                     PTIPNPEYKG WKPKKIKNPN+KGKWKAP+IDNP+FKDDP+LYVYPNLKYVGIELWQVKSGT+FDN
Sbjct:  165 DVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLPAKKIKDPEAKKPEDWEDQEYIPDPEDKKPEGYDDIPKEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGEWKPKKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKYVGIELWQVKSGTLFDN 335          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 7.670e-80
Identity = 134/171 (78.36%), Postives = 144/171 (84.21%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            +VPCETDQLTHVYTFILRPDATYSILIDN EKQ+GSLY+DWDLLP K IKDP+AKKPEDWDDKE+IPDPEDKKPEGYDDIP EI                     PTIPNPEYKGPWK KKIKNPNYKGKWKAPMIDNP+FKDDP+LYVYP L+YVG+ELWQVKSGT+FDN
Sbjct:  166 DVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLPAKKIKDPEAKKPEDWDDKEFIPDPEDKKPEGYDDIPAEITDPEAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKAKKIKNPNYKGKWKAPMIDNPEFKDDPELYVYPKLRYVGVELWQVKSGTLFDN 336          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.447e-78
Identity = 133/171 (77.78%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            EVPCETDQLTHVYTF+LRPDATYSILIDNVEKQ+GSLYSDWDLLP K IKDP AKKPEDWDDKEYIPDPED KP GYDDIPKEI                     PTIPNPEY G WKPKKIKNP YKGKWKAPMIDNP+FKDDP+LYV+P LKYVG+ELWQVKSG++FDN
Sbjct:  163 EVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWKAPMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDN 333          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 290.812 bits (743), Expect = 2.467e-78
Identity = 131/171 (76.61%), Postives = 144/171 (84.21%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            +VPCETDQLTHVYTFILRPDATYSILIDNVEKQ+GSLYSDWDLLPPK IKDP AKKPEDWD++EYI DPEDKKP+GYDDIPKEI                     PTIPNPEY G WKPK+IKNPNYKGKW+AP+IDNPDFKDDP+LYV+P LKYVG+ELWQVKSG++FDN
Sbjct:  163 DVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIPKEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDN 333          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 3.563e-77
Identity = 128/171 (74.85%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            +VPC+TDQLTHVYTFI+RPDATYSILIDN EK +GS+Y  WD+LPPK IKDP+AKKPEDWDDKEYIPDPEDKKPEGYDDIPKEI                     PTIPNPEYKGPWK KKIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN
Sbjct:  166 DVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPPKKIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDN 336          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 4.653e-77
Identity = 128/171 (74.85%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            +VPCETDQL+HVYT I+ PDATY+ILIDNVEKQSGS+Y  WD+LPPK IKDP+AKKPEDWDDKEYIPDPEDKKPEGYDDIPKEI                     PTIPNPEYKGPWK KKIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN
Sbjct:  170 DVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDN 340          
BLAST of CX288831 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 6.524e-63
Identity = 104/171 (60.82%), Postives = 129/171 (75.44%), Query Frame = 1
Query:    1 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXPTIPNPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDN 513
            ++ CETD+L H YTFILRPDA+YS+L+DN E++ GS+Y+DWD+LPP+ IK  +AKKPEDWDD+EYI DP D KPEG+D IP+EI                     P IPN  YKGPWK K+IKNPNYKGKWK P IDNP+F+DDPDLYV  ++KY GIE+WQVK+G++FDN
Sbjct:  169 DLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDN 339          
The following BLAST results are available for this feature:
BLAST of CX288831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CALR_NICPL3.327e-8381.87Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_RICCO7.412e-8380.70Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BERST1.070e-8179.53Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_PRUAR6.938e-8178.95Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_BETVU7.670e-8078.36Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR1_ARATH1.447e-7877.78Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR2_ARATH2.467e-7876.61Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_MAIZE3.563e-7774.85Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_ORYSJ4.653e-7774.85Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR3_ARATH6.524e-6360.82Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02004H07SK IF1 Citrus clementina cDNA clone C02004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288831 ID=CX288831; Name=CX288831; organism=Citrus clementina; type=EST; length=515bp
GAAGTACCATGTGAGACTGACCAACTCACTCATGTTTATACTTTCATCCT
CCGTCCAGATGCTACTTACAGCATCCTCATTGACAATGTGGAGAAACAAT
CTGGTAGCTTGTACTCTGATTGGGATCTCCTCCCTCCAAAGACCATCAAG
GATCCTGACGCCAAGAAACCTGAAGACTGGGACGACAAAGAATATATTCC
CGATCCTGAAGACAAGAAGCCAGAGGGCTATGATGACATTCCAAAGGAGA
TAACAGATCCTGATGCCAAGAAGCCTGATGATTGGGATGATGAGGAAGAT
GGTGAATGGACAGCTCCAACCATCCCTAACCCAGAGTACAAGGGTCCATG
GAAGCCAAAGAAAATTAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTC
CAATGATTGACAACCCAGATTTCAAGGATGACCCAGACCTTTATGTGTAT
CCCAACTTGAAGTATGTTGGCATTGAGTTGTGGCAGGTGAAATCTGGAAC
CATGTTTGACAATGT
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