CX288835

Overview
NameCX288835
Unique NameCX288835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288835 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.370e-34
Identity = 75/198 (37.88%), Postives = 105/198 (53.03%), Query Frame = 3 
Query:    3 YCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPFAHICLSNISLSI 596
            Y  N+ IQ I++ AP  SP T GI PDS  N  IEDC I  G D +++KSGWDEYGIAYG PT  + IRR+                 GGI +V+ E I   +S +GI  +T  GRGGY++ I +    +  +  AF   GN GSH               I ++D++  N+++A    GI   PF  IC+SN+++ +
Sbjct:  229 YSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHL 426
The following BLAST results are available for this feature:
BLAST of CX288835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI5.370e-3437.88Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionC02004H11SK IF1 Citrus clementina cDNA clone C02004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288835 ID=CX288835; Name=CX288835; organism=Citrus clementina; type=EST; length=606bp
TCTACTGCAGCAATGTACACATTCAAAATATATCAGTCCACGCTCCACCA
GAATCGCCATATACTGTTGGCATAGTTCCAGATTCTTCAGATAATGTCTG
CATCGAGGACTGCATCATCGCCATGGGGCATGATGCTATTTCTCTAAAGA
GTGGTTGGGATGAATACGGCATTGCTTATGGCAGACCAACCACAGATGTA
CACATCAGACGGGTCCTTCTTCAATCATCTTCCGGTTCTTCAGTTGCCTT
TGGTAGCGAAATGTCTGGTGGCATATCTAATGTGCAAGTGGAGAAGATTC
ATCTATACGACTCATTAAATGGTATTGAGTTTAGAACAACTAAGGGCAGA
GGTGGTTATATCAGACAAATAGTCATATCAGATGCTGAGTTATATAACAT
CAATGTGGCATTTGGTGCCTGTGGCAATTGTGGGTCCCACCCTGATGACG
ACTTTGACCCTGATGCACTCCCAGCTATAGATCAAATCACTTTCAAAGAC
ATCATTGGCACCAACATTACTATAGCGGGAAACTTCACAGGAATTCAAGA
AGCTCCCTTCGCCCATATATGCCTATCAAATATTTCCCTATCGATCAATC
CTGGCT
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