CX288836

Overview
NameCX288836
Unique NameCX288836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288836_ssr15 microsatellite CX288836_ssr15:15..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig853 contig Ccv1_Contig853:34..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 4.880e-87
Identity = 156/170 (91.76%), Postives = 167/170 (98.24%), Query Frame = 2
Query:   62 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGR
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGR 170          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.736e-84
Identity = 152/170 (89.41%), Postives = 166/170 (97.65%), Query Frame = 2
Query:   62 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGR
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGR 170          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.749e-66
Identity = 122/163 (74.85%), Postives = 145/163 (88.96%), Query Frame = 2
Query:   83 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            R+Y KT K PRRP+E  RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGR
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGR 166          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 5.805e-64
Identity = 118/161 (73.29%), Postives = 142/161 (88.20%), Query Frame = 2
Query:   89 YGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGR
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGR 170          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.582e-64
Identity = 114/162 (70.37%), Postives = 143/162 (88.27%), Query Frame = 2
Query:   86 NYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            NY KT   PRRP+EKER+DAEL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGR
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGR 165          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 115/159 (72.33%), Postives = 140/159 (88.05%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGR
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR 169          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 115/159 (72.33%), Postives = 140/159 (88.05%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGR
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR 169          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 115/159 (72.33%), Postives = 140/159 (88.05%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGR
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR 169          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 115/159 (72.33%), Postives = 140/159 (88.05%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGR
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR 169          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 115/159 (72.33%), Postives = 140/159 (88.05%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGR
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR 169          
The following BLAST results are available for this feature:
BLAST of CX288836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS92_ARATH4.880e-8791.7640S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH1.736e-8489.4140S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN4.749e-6674.8540S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME5.805e-6473.2940S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_DICDI7.582e-6470.3740S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_RAT3.763e-6372.3340S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN3.763e-6372.3340S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE3.763e-6372.3340S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN3.763e-6372.3340S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN3.763e-6372.3340S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006A01SK IF1 Citrus clementina cDNA clone C02006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288836 ID=CX288836; Name=CX288836; organism=Citrus clementina; type=EST; length=572bp
TTTACAAAGATCGCAGAGAGAGAGAGAGAGAGAGTGAGGGTAGCACCAGC
GGCGCGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAAACC
TTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTT
GAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGG
TTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACT
CTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCAG
GAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATT
ATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACC
CTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCT
CATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCT
CATTTGTAGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACA
AGTCCATTCGGAGGTGGGCGCC
back to top