CX288837

Overview
NameCX288837
Unique NameCX288837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5791 contig Ccv1_Contig5791:718..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 106.301 bits (264), Expect = 1.227e-22
Identity = 62/179 (34.64%), Postives = 89/179 (49.72%), Query Frame = 2
Query:   92 TRKITDKLKSGFSS---FFTLFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSKVLHADKSKD------NSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            T ++    K+G  S      L S  L +TT+LLW ++   AFSYYG VL T+ L     +C   +       +       S Y D+  T+ AE PGLI++ +I++  GRK +M L + +  IF   L F       TVL+F  R   +G    A +Y PE+YPT+ R  G G  SA+ R
Sbjct:  290 TGRLVSSTKAGSESRGDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMAR 468          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.227e-22
Identity = 61/162 (37.65%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  143 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      CG         +K   A +      Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       V T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + R
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMAR 469          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.227e-22
Identity = 61/162 (37.65%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  143 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      CG         +K   A +      Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       V T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + R
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMAR 469          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.093e-22
Identity = 62/162 (38.27%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  143 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG-SKVLHADKSKDNSL--------YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            LFS +   TTLLLW ++F+NAFSYYG VLLT++L      C  S    A K K +          Y D+  T+ +E PGL+++  I+D++GRK +M + F++     L L       V TV LF  R   +G    A +Y PE+YPT+ R  G G  S + R
Sbjct:  308 LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMAR 469          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22
Identity = 59/162 (36.42%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  143 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      C          +K   A +      Y+D+  T+ +E PG++++  ++D++GRK +M L FV+  +  L L       V T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + R
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMAR 469          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.954e-22
Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  143 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      C          +K   A +      Y+D+  T+ +E PG++++  ++D++GRK +M L F++  +  L L       V T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + R
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMAR 469          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 59/162 (36.42%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  143 LFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCG---------SKVLHADKSKDNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            LF+     TTLLLW ++F+NAFSYYG VLLT++L      C          +K   A +      Y+D+  T+ +E PG++++  I+D++GRK +M L FV+     L L       + T+LLF  R   +G    A +Y PE+YPT+ R  G G  S + R
Sbjct:  308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMAR 469          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 51/167 (30.54%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  140 TLFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGS------KVLHADKSK-------DNSLYVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            TL S    RT+LLLW  +F  +FSYYG+VL +S+L   +  C +      ++ H  +         ++  Y  + I+   E+  + L+ I+++ +GRK SMV++ +L+  F + +    + +  T+LLF +R   +    V  IY  E+YPTS R+ G G  ++  R
Sbjct:  288 TLISSAFRRTSLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSR 454          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 49/184 (26.63%), Postives = 83/184 (45.11%), Query Frame = 2
Query:   98 KITDKLKSGFSSFFTLFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSK------VLHADKSKDNSL----------YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            K+ + +      F  L   K +RTTL +WV++   +F+YYG +L +++L   D  CGSK      V   D  +  S           Y  + I++  E+    L+ + ++ +GR+LS+ +      +F L L    S+      LF +R           IY  E+YPT+ R  G G + ++ R
Sbjct:  257 KLVEPVLEKRGRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCR 440          
BLAST of CX288837 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 46/174 (26.44%), Postives = 77/174 (44.25%), Query Frame = 2
Query:  134 FFTLFSRKLIRTTLLLWVLFFANAFSYYGAVLLTSKLSSGDSKCGSK------VLHADKSKDNSL------------YVDVFITSFAELPGLILSAIIVDKIGRKLSMVLMFVLACIFLLPLVFHQSAVVTTVLLFGVRMCATGTITVATIYAPEIYPTSARTTGAGVASAVGR 601
            F  L   K +RTTL +W+++   +F+YYG +L +++L   D  CGSK      V+         L            Y  + I++  E+    L+ + ++ +GR+LS+ +      +F L L    S+      LF +R           IY  E+YPT  R  G G + ++ R
Sbjct:  269 FADLLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCR 442          
The following BLAST results are available for this feature:
BLAST of CX288837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
YOU1_CAEEL1.227e-2234.64Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_PONAB1.227e-2237.65Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN1.227e-2237.65Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_XENLA2.093e-2238.27Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_RAT6.090e-2236.42Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_MOUSE7.954e-2235.80Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_BOVIN1.772e-2136.42Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOPL_DANRE1.898e-1530.54Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]
SVOPL_HUMAN8.814e-1326.63Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
SVOPL_MOUSE1.662e-1126.44Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]
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Properties
Property NameValue
Genbank descriptionC02006A02SK IF1 Citrus clementina cDNA clone C02006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288837 ID=CX288837; Name=CX288837; organism=Citrus clementina; type=EST; length=601bp
AAAACTCCCACCCGGCATTCTTGTTTCTGATAAAGCAATTAAAGAGAACG
AAGAATCAAGTTTATTGCGAGATACACATATGATCTCAATGACAAGAAAG
ATCACCGACAAGTTAAAGTCTGGCTTCTCATCATTTTTTACGCTTTTCTC
AAGAAAATTAATTCGGACAACTCTTCTCCTATGGGTGTTATTCTTTGCAA
ATGCTTTCTCATATTATGGCGCTGTCTTGTTGACCTCTAAGCTAAGCAGT
GGAGACAGTAAATGCGGCTCAAAAGTCTTGCATGCTGACAAGTCGAAAGA
TAATAGCCTGTATGTCGATGTGTTTATCACTAGTTTTGCAGAGCTTCCTG
GGCTTATCTTGTCAGCAATAATAGTGGACAAAATTGGCCGCAAGCTTTCC
ATGGTTCTTATGTTTGTCTTAGCTTGCATTTTCCTTCTGCCACTGGTCTT
CCATCAGTCTGCTGTAGTAACTACGGTGTTACTGTTCGGAGTTCGCATGT
GTGCCACAGGAACCATAACAGTTGCCACAATTTATGCCCCTGAGATATAT
CCTACGTCCGCGAGGACAACTGGGGCTGGTGTTGCAAGTGCTGTGGGAAG
A
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