CX288840

Overview
NameCX288840
Unique NameCX288840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_TOBAC (Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 5.128e-80
Identity = 140/167 (83.83%), Postives = 156/167 (93.41%), Query Frame = 2
Query:    2 DWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            DWLP ++GEIQSPMGVASVEF+DPREPVA++PILRAGL L EHASSILPA KTYHLGISR+EETLQPS+YLNKLP+KFPEGSR+ VVDPMLATGGT+VAA++L+KE GV+N QIKVI AV APPALQKLSE FPGLHVY GI+DPTVNDKGFI+PGLGDAGDRSFGT
Sbjct:   58 DWLPIITGEIQSPMGVASVEFVDPREPVAIVPILRAGLALAEHASSILPATKTYHLGISRNEETLQPSVYLNKLPDKFPEGSRVIVVDPMLATGGTIVAAIDLIKERGVDNSQIKVICAVGAPPALQKLSEKFPGLHVYAGILDPTVNDKGFIIPGLGDAGDRSFGT 224          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_SYNY3 (Uracil phosphoribosyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=upp PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.533e-51
Identity = 92/166 (55.42%), Postives = 124/166 (74.70%), Query Frame = 2
Query:    5 WLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            WLPTV  E+++P+ +A    IDP+ P  ++PILRAGL LVE A  +LP  K YHLG+ R+E TL+PS+YLNKLPE+F  G+ + ++DPMLATG T++AAL+L+    ++   I+++S VAAP ALQKLS   P L +YT +ID  +ND+G+IVPGLGDAGDR FGT
Sbjct:   51 WLPTVDTEVKTPLAIAKASLIDPQTPFVIVPILRAGLALVEGAQGLLPLAKIYHLGLVRNETTLEPSLYLNKLPERFAPGTHLLLLDPMLATGNTIMAALDLLMARDIDANLIRLVSVVAAPTALQKLSNAHPNLTIYTAMIDEQLNDRGYIVPGLGDAGDRCFGT 216          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_SYNP6 (Uracil phosphoribosyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=upp PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 90/167 (53.89%), Postives = 126/167 (75.45%), Query Frame = 2
Query:    2 DWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +WLPT+   +Q+P+     EF+D  +P+A++PILRAGL LVE    +LP  + +H+G+ RDE +L+P  YLN LPE+    SR+ V+DPMLATGG+++  L+L+++ GV  +Q++V+S VAAPPALQKLS+ +P L +Y+ IID  +NDKGFIVPGLGDAGDR FGT
Sbjct:   50 EWLPTIPAAVQTPLAETPAEFVDFSQPLAIVPILRAGLGLVESVQQVLPTARIFHVGLKRDEVSLEPRCYLNHLPEQLEVNSRVLVLDPMLATGGSLLYTLDLLRDRGVSAEQVRVLSIVAAPPALQKLSQAYPALTIYSAIIDEQLNDKGFIVPGLGDAGDRLFGT 216          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_SYNE7 (Uracil phosphoribosyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=upp PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.901e-50
Identity = 90/167 (53.89%), Postives = 126/167 (75.45%), Query Frame = 2
Query:    2 DWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +WLPT+   +Q+P+     EF+D  +P+A++PILRAGL LVE    +LP  + +H+G+ RDE +L+P  YLN LPE+    SR+ V+DPMLATGG+++  L+L+++ GV  +Q++V+S VAAPPALQKLS+ +P L +Y+ IID  +NDKGFIVPGLGDAGDR FGT
Sbjct:   50 EWLPTIPAAVQTPLAETPAEFVDFSQPLAIVPILRAGLGLVESVQQVLPTARIFHVGLKRDEVSLEPRCYLNHLPEQLEVNSRVLVLDPMLATGGSLLYTLDLLRDRGVSAEQVRVLSIVAAPPALQKLSQAYPALTIYSAIIDEQLNDKGFIVPGLGDAGDRLFGT 216          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_ANASP (Uracil phosphoribosyltransferase OS=Anabaena sp. (strain PCC 7120) GN=upp PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.242e-50
Identity = 94/167 (56.29%), Postives = 125/167 (74.85%), Query Frame = 2
Query:    2 DWLPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +WLPT    +Q+P+ +     I+P+ PVAV+PILRAGL L+E A ++LP    YHLG+ R+EETL+ S YLNKLPEKF   +R+ + DPMLATGG+++ A++ + E GV+   ++++S VAAPPALQKL+  + GL VYT  ID TVND+GFIVPGLGDAGDR FGT
Sbjct:   50 EWLPTEETTVQTPLEICPATVINPQVPVAVVPILRAGLGLLEGAQTVLPLASIYHLGLVRNEETLEASCYLNKLPEKFDPQTRVLITDPMLATGGSIMKAMSELTERGVDPSLVRIVSVVAAPPALQKLNAAYSGLIVYTATIDETVNDQGFIVPGLGDAGDRIFGT 216          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_DICT6 (Uracil phosphoribosyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=upp PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.012e-37
Identity = 77/165 (46.67%), Postives = 113/165 (68.48%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LPT   E+++P+G+A  + +D ++ +A++PILRAGLV+ +    ILP+ K  H+G+ RD ETL+P  Y  KLPE   +   + VVDPMLATGG+ VAA++++K  GV  K IK +  ++AP  ++ L  + P + +YT  ID  +ND G+I+PGLGDAGDR FGT
Sbjct:   46 LPTKEVEVETPLGIAKGKVLDNKD-LAIVPILRAGLVMADGMLQILPSAKVGHIGLYRDPETLKPVQYYTKLPEDIDK-REVIVVDPMLATGGSAVAAISILKAKGV--KDIKFVCIISAPEGIETLRNSHPDVDIYTAAIDERLNDHGYIIPGLGDAGDRLFGT 206          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_DICTD (Uracil phosphoribosyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=upp PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.545e-36
Identity = 75/165 (45.45%), Postives = 113/165 (68.48%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LPT   E+++P+G+A  + ++ ++ +A++PILRAGLV+ E    ILP+ K  H+G+ RD  TL+P  Y  KLPE   +   + VVDPMLATGG+ +AA++++K  GV+N  IK +  ++AP  ++ L  + P + +YT  ID  +ND G+I+PGLGDAGDR FGT
Sbjct:   46 LPTKEVEVETPLGIAKGKVLNNKD-LAIVPILRAGLVMAEGMLRILPSAKVGHIGLYRDPNTLKPVQYYTKLPEDIDK-REVVVVDPMLATGGSAIAAISILKTKGVKN--IKFVCIISAPEGIEALKNSHPDVDIYTAAIDEKLNDHGYIIPGLGDAGDRLFGT 206          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_STRMU (Uracil phosphoribosyltransferase OS=Streptococcus mutans GN=upp PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35
Identity = 80/165 (48.48%), Postives = 113/165 (68.48%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI++P+   +V+     + +A++PILRAG+ +V+   S++PA K  H+G+ RDEETL+P  YL KLPE   +  +IFVVDPMLATGG+ V A++ +K+ G  N  IK +  V+AP  L+KL E  P + +YT  +D  +N+KG+IVPGLGDAGDR FGT
Sbjct:   48 LPLEEVEIETPI-TKTVQKQLTGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRDEETLEPVEYLVKLPEDIDQ-RQIFVVDPMLATGGSAVLAIDSLKKRGAAN--IKFVCLVSAPEGLKKLQEAHPDIDIYTAALDEKLNEKGYIVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_STRU0 (Uracil phosphoribosyltransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=upp PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34
Identity = 78/165 (47.27%), Postives = 112/165 (67.88%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EIQ+P+     + +  ++ +A++PILRAG+ +V+   S++PA K  H+G+ RDEETL+P  YL KLPE   +  +IFVVDPMLATGG+ + A++ +K+ G  N  IK +  VAAP  ++KL E  P + +YT  +D  +N+ G+IVPGLGDAGDR FGT
Sbjct:   48 LPLEDVEIQTPVAKTIQKQLTGKK-LAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETLEPVEYLVKLPEDIDQ-RQIFVVDPMLATGGSAILAVDSLKKRGAGN--IKFVCLVAAPEGVKKLQEAHPDVDIYTAALDEKLNEHGYIVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_ENTFA (Uracil phosphoribosyltransferase OS=Enterococcus faecalis GN=upp PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.556e-34
Identity = 76/165 (46.06%), Postives = 109/165 (66.06%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +P     I++PMG ++ + +  ++ VA+IPILRAG+ +V+    ++PA K  H+G+ RDEETLQP  Y  KLPE      ++FVVDPMLATGG+ + A++ +KE G  N  IK +  VA P  ++ L E  P + +YT  +D  +N+ G+IVPGLGDAGDR FGT
Sbjct:   48 MPLEDVVIETPMGKSTQKTLSGKK-VAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPEDI-ASRQLFVVDPMLATGGSAIMAIDSLKERGASN--IKFVCLVAVPEGVKALQEAHPDVDIYTAALDERLNEDGYIVPGLGDAGDRLFGT 208          
The following BLAST results are available for this feature:
BLAST of CX288840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UPP_TOBAC5.128e-8083.83Uracil phosphoribosyltransferase OS=Nicotiana taba... [more]
UPP_SYNY36.533e-5155.42Uracil phosphoribosyltransferase OS=Synechocystis ... [more]
UPP_SYNP61.901e-5053.89Uracil phosphoribosyltransferase OS=Synechococcus ... [more]
UPP_SYNE71.901e-5053.89Uracil phosphoribosyltransferase OS=Synechococcus ... [more]
UPP_ANASP3.242e-5056.29Uracil phosphoribosyltransferase OS=Anabaena sp. (... [more]
UPP_DICT67.012e-3746.67Uracil phosphoribosyltransferase OS=Dictyoglomus t... [more]
UPP_DICTD4.545e-3645.45Uracil phosphoribosyltransferase OS=Dictyoglomus t... [more]
UPP_STRMU6.563e-3548.48Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRU04.254e-3447.27Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_ENTFA5.556e-3446.06Uracil phosphoribosyltransferase OS=Enterococcus f... [more]

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Properties
Property NameValue
Genbank descriptionC02006A05SK IF1 Citrus clementina cDNA clone C02006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288840 ID=CX288840; Name=CX288840; organism=Citrus clementina; type=EST; length=545bp
GGATTGGTTGCCTACTGTCTCAGGGGAAATTCAGTCACCAATGGGTGTTG
CTTCAGTTGAATTTATTGATCCGAGGGAGCCTGTCGCGGTTATTCCAATA
TTGAGAGCAGGTCTTGTTCTTGTGGAGCATGCATCGTCAATCTTGCCCGC
AATAAAAACATATCATCTAGGTATATCCAGAGATGAAGAGACGCTTCAGC
CATCGATATACCTGAATAAATTGCCTGAAAAATTTCCAGAGGGATCACGA
ATATTTGTAGTAGATCCTATGCTGGCAACAGGTGGTACAGTTGTGGCAGC
TCTTAACCTTGTAAAGGAATGTGGGGTGGAGAACAAGCAAATTAAAGTGA
TATCTGCTGTAGCTGCTCCTCCAGCCCTCCAAAAGCTCAGCGAGAATTTC
CCTGGGCTTCATGTGTACACCGGAATTATTGATCCCACTGTCAATGACAA
AGGGTTTATAGTTCCTGGGCTTGGAGATGCAGGTGATCGTAGCTTCGGGA
CATAAAAGTTACACGAGTAATACTAGCAACAGTATGTCACCCTCA
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