CX288842

Overview
NameCX288842
Unique NameCX288842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9348 contig Ccv1_Contig9348:144..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288842 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  123 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 275
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX288842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.818e-1878.43Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC02006A07SK IF1 Citrus clementina cDNA clone C02006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288842 ID=CX288842; Name=CX288842; organism=Citrus clementina; type=EST; length=531bp
TAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAG
AGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGAC
GCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGT
TTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTT
GACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAG
TGGGGAGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGC
GATGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTA
GTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCG
TTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTT
TTAAAATGCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATAT
CATATAATTTAATAATTGTATGTGATGTGAG
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