CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_DESPS (Argininosuccinate lyase OS=Desulfotalea psychrophila GN=argH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.231e-26
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KEP FD++ T+   L ++AE   ++ FN  R  +A   G++ AT LADYLV K +PFR +H IVG AVA C++K C+L DL+L EM+  +PV + DV+  L  E ++    S G TG   VTE L
Sbjct:  330 KEPVFDAIDTVSASLSITAEMMAHMKFNTARCAEATETGFITATDLADYLVMKDVPFRQAHHIVGSAVAACIAKGCELPDLTLTEMQEFSPVIESDVFAVLTAEGSVNSRVSTGGTGLVRVTEAL 454          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_SYNAS (Argininosuccinate lyase OS=Syntrophus aciditrophicus (strain SB) GN=argH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.780e-23
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KEP FD+V T+   L++ AE  +N+ FN E++++    G+  AT LA+YLV K IPFR +H IVGK V+ C+  + +L  LS++E +   PV ++D+++ L V N++R   S+G T    V EQ+
Sbjct:  331 KEPLFDTVDTVKACLQILAEMIRNMKFNREKMRQEAEGGFSTATDLAEYLVMKGIPFREAHGIVGKLVSFCIECKKELAQLSMEEFQRFCPVINEDIHDRLSVSNSVRSRKSYGGTACRQVMEQI 455          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAHJ (Argininosuccinate lyase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=argH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.100e-22
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FDSV+TI G L +       +T N +R+ + +   + +AT LADYLV K +PFR +H+IVGK V  C+ +   L D+ L+  + LN   D+DVY+YL  EN + +  S+GSTG   V  QL
Sbjct:  326 KEGLFDSVRTIKGSLRIFEGMLDTMTVNTDRLNETVHQDFSNATELADYLVAKDVPFRKAHEIVGKIVFECIQQGIYLLDVPLERYKELNSNIDQDVYDYLKPENCLSRRKSYGSTGQDAVRHQL 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_ALKMQ (Argininosuccinate lyase OS=Alkaliphilus metalliredigens (strain QYMF) GN=argH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.100e-22
Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGST 349
            K P FD+V  + G LE+  E  ++ TF  E +KKA   G+++AT +ADYLV K +PFR++H+IVGK V  CV     ++DL+LDE ++ +P F +D+ E + +EN +    S GST
Sbjct:  324 KIPLFDTVDNVKGCLEIFNEMIKSTTFKKENMKKATKEGFMNATDVADYLVKKGVPFRSAHEIVGKMVLHCVQTSKTIEDLTLDEFQNFSPTFTEDILEVIQIENCVASKISQGST 439          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAAR (Argininosuccinate lyase OS=Staphylococcus aureus (strain MRSA252) GN=argH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.436e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V TI G L +     Q +T N ER+ + +   + +AT LADYLV K IPFRT+H+IVGK V  C+ +   L D+ L   +  +   D D+Y+YL  EN +++  S+GSTG + V +QL
Sbjct:  326 KEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLSTYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQL 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAS1 (Argininosuccinate lyase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=argH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V T+ G L +      ++T NVER+++ +   + +AT LADYLVNK +PFR++H++VGK V   +     L D+ L++ +S N + + D+Y+YL  EN + +  S+GSTG + V +QL
Sbjct:  326 KEGLFDAVHTLKGSLRIFDGMIDSMTVNVERLQQTVYNDFSNATELADYLVNKGVPFRSAHEVVGKIVLWSIQHNIYLLDVPLEQYQSANELIEADIYDYLKPENCVSRRISYGSTGQSSVQQQL 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAAW (Argininosuccinate lyase OS=Staphylococcus aureus (strain MW2) GN=argH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V TI G L +     Q +T N ER+ + +   + +AT LADYLV K IPFRT+H+IVGK V  C+ +   L D+ L   +  +   D D+Y+YL  EN +++  S+GSTG + V +QL
Sbjct:  326 KEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQL 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAAT (Argininosuccinate lyase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=argH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V TI G L +     Q +T N ER+ + +   + +AT LADYLV K IPFRT+H+IVGK V  C+ +   L D+ L   +  +   D D+Y+YL  EN +++  S+GSTG + V +QL
Sbjct:  326 KEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQL 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAAS (Argininosuccinate lyase OS=Staphylococcus aureus (strain MSSA476) GN=argH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V TI G L +     Q +T N ER+ + +   + +AT LADYLV K IPFRT+H+IVGK V  C+ +   L D+ L   +  +   D D+Y+YL  EN +++  S+GSTG + V +QL
Sbjct:  326 KEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQL 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAAN (Argininosuccinate lyase OS=Staphylococcus aureus (strain N315) GN=argH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V TI G L +     Q +T N ER+ + +   + +AT LADYLV K IPFRT+H+IVGK V  C+ +   L D+ L   +  +   D D+Y+YL  EN +++  S+GSTG + V +QL
Sbjct:  326 KEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQL 450          
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_DESPS6.231e-2644.80Argininosuccinate lyase OS=Desulfotalea psychrophi... [more]
ARLY_SYNAS3.780e-2340.80Argininosuccinate lyase OS=Syntrophus aciditrophic... [more]
ARLY_STAHJ1.100e-2242.40Argininosuccinate lyase OS=Staphylococcus haemolyt... [more]
ARLY_ALKMQ1.100e-2243.10Argininosuccinate lyase OS=Alkaliphilus metallired... [more]
ARLY_STAAR1.436e-2242.40Argininosuccinate lyase OS=Staphylococcus aureus (... [more]
ARLY_STAS12.450e-2240.00Argininosuccinate lyase OS=Staphylococcus saprophy... [more]
ARLY_STAAW2.450e-2242.40Argininosuccinate lyase OS=Staphylococcus aureus (... [more]
ARLY_STAAT2.450e-2242.40Argininosuccinate lyase OS=Staphylococcus aureus (... [more]
ARLY_STAAS2.450e-2242.40Argininosuccinate lyase OS=Staphylococcus aureus (... [more]
ARLY_STAAN2.450e-2242.40Argininosuccinate lyase OS=Staphylococcus aureus (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
back to top