CX288848

Overview
NameCX288848
Unique NameCX288848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_RAT (GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.255e-16
Identity = 56/174 (32.18%), Postives = 91/174 (52.30%), Query Frame = 1
Query:   10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525
            TN F SP WGG++V+N    + + +  P R  +   D+  V EVF+ Q R LFG+    +      SG     P  +G   WELD L    +  NL +  TTL SL++L+  +  ++I D++   V  ++ A + A    +LG   S+  +S +A + +E AFF PS++ + Y+
Sbjct:  348 TNAFHSPRWGGIMVYNVDPKIYNASELPVRVEV---DMAQVMEVFLAQLRLLFGIAQPQVPPKCLLSG-----PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYF 513          
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_BOVIN (GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.255e-16
Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 1
Query:   10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525
            TN F SP WGG++V+N      + +  P R  +   D+  V EVF+ Q R LFG+    L           P  +G   WELD L    +  NL +  TTL SL++L+  +  ++I D++   V  ++ A + A    S G   S+  +S +A + +E AFF PS++ + Y+
Sbjct:  348 TNAFHSPRWGGIMVYNVDPKAYNGSQLPVRVEV---DMMRVMEVFLAQLRLLFGIAQPQL---PPKCLFFGPKSEGIMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEELSSGHLASAFAASQEAVTSSERAFFDPSLLHLLYF 513          
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_MOUSE (GPI transamidase component PIG-S OS=Mus musculus GN=Pigs PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.946e-16
Identity = 56/174 (32.18%), Postives = 91/174 (52.30%), Query Frame = 1
Query:   10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525
            TN F SP WGG++V+N    + + +  P R  +   D+  V EVF+ Q R LFG+    +      SG     P  +G   WELD L    +  NL +  TTL SL++L+  +  ++I D++   V  ++ A + A    +LG   S+  +S +A + +E AFF PS++ + Y+
Sbjct:  348 TNAFHSPRWGGIMVYNVDPKIYNASELPVRVEV---DMVRVMEVFLAQLRLLFGIAQPQVPPKCLLSG-----PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAKALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYF 513          
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_HUMAN (GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSRE-DLQAVFEVFMGQFRQLFGLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525
            TN F SP WGG++V+N    ++S+T + S   +  E D+  V EVF+ Q R LFG+    L      SG     P+ +G   WELD L    +  NL +  TTL SL++L+  +  ++I D++   V  ++ A + +    + G   S+ V+S +A + +E AFF PS++ + Y+
Sbjct:  348 TNAFHSPRWGGIMVYN----VDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSG-----PTSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLYF 513          
The following BLAST results are available for this feature:
BLAST of CX288848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PIGS_RAT2.255e-1632.18GPI transamidase component PIG-S OS=Rattus norvegi... [more]
PIGS_BOVIN2.255e-1631.98GPI transamidase component PIG-S OS=Bos taurus GN=... [more]
PIGS_MOUSE2.946e-1632.18GPI transamidase component PIG-S OS=Mus musculus G... [more]
PIGS_HUMAN6.562e-1633.14GPI transamidase component PIG-S OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionC02006B02SK IF1 Citrus clementina cDNA clone C02006B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288848 ID=CX288848; Name=CX288848; organism=Citrus clementina; type=EST; length=532bp
ATTTCTAAGACAAATGGTTTTATATCTCCTATGTGGGGAGGTGTTGTTGT
TTGGAACCCTCCTGGCTGTTTGAATTCTGAAACTAATCATCCTTCCAGGC
ATACTATGTCTCGTGAGGATCTTCAGGCGGTTTTTGAAGTTTTCATGGGG
CAGTTCCGGCAGCTATTCGGCCTTAAATCCAATAACCTTTACATTGGTGC
CTCTGGCACATACCACCTTTTGCCTAGTGGAAAAGGCTTCACAGAATGGG
AGCTGGATGTTTTGTCTCGGCAGTTCGCATGCTTTAATCTTCATTCATGT
GCCACAACACTTGGTTCCCTTTCCAGATTGGTGCAGTCGCTGCCAAGGAT
GATTATCATGGATGAGATAGGAAAACTGGTTCAGTTTTCTCTTGAGGCAG
CAAAATTGGCCCAGAGTAATGCCTCTTTAGGGGATAATGAATCTTCTGCA
GTGTCCTCAGGACAAGCAAGATCCCTAGCAGAGGATGCCTTTTTTCACCC
GTCTATCATGTCCATCAGTTACTACTCATTTG
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