CX288848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_RAT (GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 2.255e-16 Identity = 56/174 (32.18%), Postives = 91/174 (52.30%), Query Frame = 1 Query: 10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525 TN F SP WGG++V+N + + + P R + D+ V EVF+ Q R LFG+ + SG P +G WELD L + NL + TTL SL++L+ + ++I D++ V ++ A + A +LG S+ +S +A + +E AFF PS++ + Y+ Sbjct: 348 TNAFHSPRWGGIMVYNVDPKIYNASELPVRVEV---DMAQVMEVFLAQLRLLFGIAQPQVPPKCLLSG-----PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYF 513
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_BOVIN (GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 2.255e-16 Identity = 55/172 (31.98%), Postives = 87/172 (50.58%), Query Frame = 1 Query: 10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGASGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525 TN F SP WGG++V+N + + P R + D+ V EVF+ Q R LFG+ L P +G WELD L + NL + TTL SL++L+ + ++I D++ V ++ A + A S G S+ +S +A + +E AFF PS++ + Y+ Sbjct: 348 TNAFHSPRWGGIMVYNVDPKAYNGSQLPVRVEV---DMMRVMEVFLAQLRLLFGIAQPQL---PPKCLFFGPKSEGIMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAEELSSGHLASAFAASQEAVTSSERAFFDPSLLHLLYF 513
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_MOUSE (GPI transamidase component PIG-S OS=Mus musculus GN=Pigs PE=1 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 2.946e-16 Identity = 56/174 (32.18%), Postives = 91/174 (52.30%), Query Frame = 1 Query: 10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSREDLQAVFEVFMGQFRQLFGLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525 TN F SP WGG++V+N + + + P R + D+ V EVF+ Q R LFG+ + SG P +G WELD L + NL + TTL SL++L+ + ++I D++ V ++ A + A +LG S+ +S +A + +E AFF PS++ + Y+ Sbjct: 348 TNAFHSPRWGGIMVYNVDPKIYNASELPVRVEV---DMVRVMEVFLAQLRLLFGIAQPQVPPKCLLSG-----PKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYRAVAAVQKAAKALALGHLSSAFAASQEAVTSSERAFFDPSLLHLLYF 513
BLAST of CX288848 vs. ExPASy Swiss-Prot
Match: PIGS_HUMAN (GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16 Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 1 Query: 10 TNGFISPMWGGVVVWNPPGCLNSETNHPSRHTMSRE-DLQAVFEVFMGQFRQLFGLKSNNLYIGA--SGTYHLLPSGKGFTEWELDVLSRQFACFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKLVQFSLEAAKLAQSNASLGDNESSAVSSGQARSLAEDAFFHPSIMSISYY 525 TN F SP WGG++V+N ++S+T + S + E D+ V EVF+ Q R LFG+ L SG P+ +G WELD L + NL + TTL SL++L+ + ++I D++ V ++ A + + + G S+ V+S +A + +E AFF PS++ + Y+ Sbjct: 348 TNAFHSPRWGGIMVYN----VDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSG-----PTSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLYF 513 The following BLAST results are available for this feature:
BLAST of CX288848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288848 ID=CX288848; Name=CX288848; organism=Citrus clementina; type=EST; length=532bpback to top |