CX288856

Overview
NameCX288856
Unique NameCX288856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9784 contig Ccv1_Contig9784:16..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288856 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.831e-25
Identity = 59/103 (57.28%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  107 EEPIDTPSGEDCSRNKESLDGDDVLMRFKLFKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYH 415
            E PI  P      RN E     D L  +  FK+FD VED SDH+YAS  ++ +Q S    KRIQ+EW+ILE DLP+ IFVR YESRMDLLRAVI+GA+GTPYH
Sbjct:  280 EPPILPPDDSRVKRNME-----DYLGLYLFFKRFDIVEDFSDHHYASKGTTSKQHSKDWAKRIQDEWRILEKDLPEMIFVRAYESRMDLLRAVIIGAQGTPYH 377          
BLAST of CX288856 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.505e-23
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  197 FKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYH 415
            FK+FD VED SDH+YAS   S +Q S   VK++Q +WKILENDLP+ I VR  ESRMDLLRAVI+GAEGTPYH
Sbjct:  244 FKRFDTVEDFSDHHYASKGKSSKQHSKNWVKKVQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYH 316          
BLAST of CX288856 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  197 FKQFDAVEDHSDHYYASNVSSLEQP--SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYH 415
            F+QFD V D SDH++ S+   L Q   +   VK++Q+EW  LE +LP+TI+VRV E RMDLLRA +VGA GTPYH
Sbjct:  633 FRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQEWSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYH 707          
BLAST of CX288856 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.930e-15
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  197 FKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPY 412
            F++FD  +D  DH++   V   +    +  K++ ++WKIL+N+LPD IFVR YE RMDLLRAVIVGA GTPY
Sbjct:  824 FRRFDISQDPLDHHFLG-VDGQKTKERQWFKKVDQDWKILQNNLPDGIFVRAYEDRMDLLRAVIVGAFGTPY 894          
The following BLAST results are available for this feature:
BLAST of CX288856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBC25_ARATH1.831e-2557.28Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC26_ARATH8.505e-2368.49Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC24_ARATH6.973e-1756.00Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
UBC23_ARATH2.930e-1552.78Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC02006B10SK IF1 Citrus clementina cDNA clone C02006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288856 ID=CX288856; Name=CX288856; organism=Citrus clementina; type=EST; length=417bp
GCCTTGGTGGCACGAGTCTTTGAAAGCTGAACTGAATCCAACTTTTGCCA
ACAACACTAATCATCTAAGTTTTTATGATCCATTTGATAATGAGGATATG
CCTCCTGAAGAACCGATCGATACCCCTAGTGGTGAAGATTGCAGTAGGAA
TAAGGAAAGCCTAGATGGAGATGATGTTCTGATGAGATTCAAACTTTTTA
AACAGTTTGATGCTGTTGAAGATCATTCAGACCATTACTATGCTTCTAAT
GTTTCATCATTGGAGCAGCCATCAAATAAATTGGTGAAGCGAATTCAGGA
AGAGTGGAAAATCCTGGAAAATGATTTGCCAGATACAATTTTTGTGAGGG
TTTATGAATCAAGGATGGATCTTTTGAGGGCCGTAATTGTAGGGGCAGAG
GGAACTCCCTACCATGA
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