CX288857

Overview
NameCX288857
Unique NameCX288857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15007 contig Ccv1_Contig15007:320..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288857 vs. ExPASy Swiss-Prot
Match: FKB22_ARATH (FK506-binding protein 2-2 OS=Arabidopsis thaliana GN=FKBP15-2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.921e-18
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:    2 CVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELATVNGKPASGEK 148
            CVGEKRKLKIPAKLGYG QGSPPTIPGGATLIFDTEL  VN KPA GE+
Sbjct:  100 CVGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELIAVNEKPAGGEE 148
[Close]
BLAST of CX288857 vs. ExPASy Swiss-Prot
Match: FKB15_VICFA (FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:    2 CVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELATVNGKPASGEKT 151
            C+GEKRKLKIPAKLGYG QGSPPTIPGGATLIFDTEL  VN K  S EK+
Sbjct:   97 CLGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELVGVNDKSLSEEKS 146
[Close]
BLAST of CX288857 vs. ExPASy Swiss-Prot
Match: FKB21_ARATH (FK506-binding protein 2-1 OS=Arabidopsis thaliana GN=FKBP15-1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.348e-16
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:    2 CVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELATVNGKPASGEKT 151
            CVGEKRKLKIP+KLGYG  GSPP IPGGATLIFDTEL  VNG+P+S  K+
Sbjct:  100 CVGEKRKLKIPSKLGYGDNGSPPKIPGGATLIFDTELVAVNGEPSSEAKS 149
The following BLAST results are available for this feature:
BLAST of CX288857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FKB22_ARATH1.921e-1887.76FK506-binding protein 2-2 OS=Arabidopsis thaliana ... [more]
FKB15_VICFA1.054e-1682.00FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE... [more]
FKB21_ARATH2.348e-1678.00FK506-binding protein 2-1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC02006B11SK IF1 Citrus clementina cDNA clone C02006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288857 ID=CX288857; Name=CX288857; organism=Citrus clementina; type=EST; length=443bp
GTGCGTCGGTGAGAAGCGAAAGTTGAAAATTCCTGCAAAGCTTGGTTATG
GGGCCCAGGGTTCTCCCCCTACCATCCCAGGTGGAGCAACATTGATCTTT
GACACCGAGCTTGCAACAGTAAATGGGAAACCAGCAAGCGGAGAGAAAAC
TGAAGATGAGCTATGATTACCTCTCGATTGAGCAGATTTACCTAAGTCAT
TCCTGTTGCTTTTAATGTATCGGCATAAACCAGGTTTCATAGGCCAGAAT
AATTTATCTATTTAGTGACCTACAGCTGAACAATTTTTGTTGTTTGGATC
AGAAGAAATCTTTTTAAGGGGACAAAATATTAATCTCTGAATATTCGGAA
GGCTGGTTGCCTCACACATATATATGTGCGGATCTTAAGTGATGTGAACA
TAGCATTATTAGATTTTTCGCAGATCTGCCACTAACCTGACAT
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