CX288859

Overview
NameCX288859
Unique NameCX288859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig396 contig Ccv1_Contig396:703..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.416e-38
Identity = 87/171 (50.88%), Postives = 114/171 (66.67%), Query Frame = 2
Query:    2 CKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEAS--GLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            C +   ++D T+G DG VS+EV PRLA DT+ T+  A+ L  +V+RPN++IKIPAT   +P+I + +++GISVNVTLIFS+ RYE+VIDA+ DG+E +     DLSR+ SVASFFVSRVDT +DK LEKIG  EAL  +                  F+ PRW AL  KGA
Sbjct:   89 CDVTRPVFDATDGVDGRVSIEVDPRLAHDTEATIAEARALWWLVDRPNLFIKIPATVEGLPAIAQCLAEGISVNVTLIFSVKRYEQVIDAFFDGVERAIEAGHDLSRLASVASFFVSRVDTEVDKRLEKIG-GEALQWKAKAAVANARLAYRTYEEKFATPRWQALAAKGA 258          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL1_STRAW (Transaldolase 1 OS=Streptomyces avermitilis GN=tal1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.416e-38
Identity = 92/170 (54.12%), Postives = 110/170 (64.71%), Query Frame = 2
Query:    8 LFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            +   +YD T G DG VS+EV PRLA DT+ T+  AK L  +V+RPNV IKIPAT   +P+I EVI  GISVNVTLIFSL RY EV+DAYL GLE   A+G+ DL+ + SVASFFVSRVD+ IDK L K GT +A  L+G                 F+G RW AL   GA
Sbjct:   97 ILRPVYDATGGRDGRVSIEVDPRLAHDTEATIAEAKQLAWLVDRPNVMIKIPATKAGLPAITEVIGLGISVNVTLIFSLERYREVMDAYLAGLERAQAAGI-DLAGIHSVASFFVSRVDSEIDKRLAKAGTDDAQALKGKAALANARLAYEAYEEVFAGERWTALAPAGA 265          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL2_STRAW (Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.771e-37
Identity = 91/170 (53.53%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    8 LFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEAS---GLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            +   ++D T+G DG VS+EV PRLA +T+ TV  AK L  +V+RPN  IKIPAT   +P+I EVI  GISVNVTLIFSL RY  V+DAYL GLE +   GL DLS++ SVASFFVSRVDT IDK ++ +GTPEA   RG                 FS  RW AL K  A
Sbjct:   91 ILRPVFDATDGQDGRVSIEVDPRLAHNTKATVAEAKQLAWLVDRPNTLIKIPATKAGIPAITEVIGLGISVNVTLIFSLERYRMVMDAYLAGLEKAKERGL-DLSKIHSVASFFVSRVDTEIDKRIDALGTPEAKAARGKAGLANARLAYEAYEAVFSTDRWLALDKAQA 259          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.771e-37
Identity = 90/165 (54.55%), Postives = 108/165 (65.45%), Query Frame = 2
Query:    8 LFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDAL 493
            +   +YD + G DG VS+EV PRLA DT  TV  A+ L  +V+RPNV IKIPAT   +P+I EVI  GISVNVTLIFSL RY EV+DAYL GLE   A+G+ DL+ + SVASFFVSRVD+ IDK L  +GT EAL LRG                 F+G R+ AL
Sbjct:  100 VLRGVYDASGGRDGRVSIEVDPRLAHDTAATVAEARQLSWLVDRPNVMIKIPATKAGLPAITEVIGAGISVNVTLIFSLERYREVMDAYLAGLEKAQAAGI-DLAGIHSVASFFVSRVDSEIDKRLSLLGTEEALGLRGRAALANARLAYEAYENVFAGDRFTAL 263          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL2_STRCO (Transaldolase 2 OS=Streptomyces coelicolor GN=tal2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.326e-36
Identity = 89/170 (52.35%), Postives = 107/170 (62.94%), Query Frame = 2
Query:    8 LFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEAS---GLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            +   +YD T G DG VS+EV PRLA +T  TV  AK L  +V+RPN +IKIPAT   +P+I E I  GISVNVTLIFSL RY +V+DA+L GLE +   GL DLS++ SVASFFVSRVDT IDK ++ +GT EA   RG                 F   RW AL K GA
Sbjct:   91 ILRPVYDNTGGKDGRVSIEVDPRLAHNTHATVAEAKQLAWLVDRPNTFIKIPATEAGLPAIAETIGLGISVNVTLIFSLERYRKVMDAFLTGLEKAKERGL-DLSQIHSVASFFVSRVDTEIDKRIDALGTDEAKAQRGKAAVANARLAYQAYEEVFGTDRWAALEKAGA 259          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.731e-36
Identity = 83/171 (48.54%), Postives = 109/171 (63.74%), Query Frame = 2
Query:    2 CKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEAS--GLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            C +   +YD + G DG VS+EV PRLA + + TV  A+ L  +V+RPN++IKIPAT   +P+I E ++QGISVNVTLIF L RY+ VIDA++ G+E +     D+S + SVASFFVSRVD+ +D  L+KIGTPEA  L                   F+ PRW AL  KGA
Sbjct:   89 CDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTVAEARALWWLVDRPNLFIKIPATQDGLPAITETLAQGISVNVTLIFGLDRYDAVIDAFMSGVEQAIEAGRDVSDLASVASFFVSRVDSEVDARLDKIGTPEAKALHAKTAIANARLAYERYEKAFATPRWKALAAKGA 259          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL_THEFY (Transaldolase OS=Thermobifida fusca (strain YX) GN=tal PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.953e-36
Identity = 86/165 (52.12%), Postives = 108/165 (65.45%), Query Frame = 2
Query:   20 IYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLS--DLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            +Y+ T+G DG VS+EV PRLA DT+ TV  A+ L  +V+RPN+ IKIPAT   +P+I   +++GISVNVTLIFSL RY  V+DA+L GLE +  +  DLS + SVASFFVSRVDT +DK L KI T EA+ LRG                 FS  RW AL + GA
Sbjct:   95 VYEATDGVDGRVSLEVDPRLARDTERTVAEARALWWLVDRPNLMIKIPATVEGLPAITAALAEGISVNVTLIFSLERYRAVMDAFLAGLEQAQQAGRDLSTIHSVASFFVSRVDTEVDKRLSKIATEEAVALRGKTALANARLAYAAYEEVFSSARWTALAQAGA 259          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.037e-36
Identity = 85/172 (49.42%), Postives = 111/172 (64.53%), Query Frame = 2
Query:    2 CKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXFSGPRWDALVKKGA 508
            C +   +YD + G DG VS+EV PRLA + + T+  A+ L  +V+RPN++IKIPAT   + +I E ++QGISVNVTLIF L RY+ VIDA++ GLE   A+G  D++ + SVASFFVSRVDT +D+ LEKIGT EA  LRG                 F+ PRW AL   GA
Sbjct:   89 CDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTLAEARALWWLVDRPNLFIKIPATRAGLSAITETLAQGISVNVTLIFGLDRYDAVIDAFMTGLEKALAAG-RDITDLASVASFFVSRVDTEVDQRLEKIGTSEAKALRGRAAVANARLAFERYEKAFATPRWAALAAAGA 259          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL_MYCLE (Transaldolase OS=Mycobacterium leprae GN=tal PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.466e-35
Identity = 84/172 (48.84%), Postives = 112/172 (65.12%), Query Frame = 2
Query:    2 CKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXF-SGPRWDALVKKGA 508
            C +    ++ ++G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GISVNVTLIFS+ R+ EVIDAYL G+E  A    DLS++ SVASFFVSRVDT IDK LEK+G+ +AL LRG                 F  G R+  L+ +GA
Sbjct:   94 CDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVTLIFSVQRHREVIDAYLAGIEKAAEAGRDLSKIVSVASFFVSRVDTEIDKRLEKLGSEQALALRGQAGVANARLAYAAYQKAFEGGQRYQTLMARGA 265          
BLAST of CX288859 vs. ExPASy Swiss-Prot
Match: TAL_MYCLB (Transaldolase OS=Mycobacterium leprae (strain Br4923) GN=tal PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.466e-35
Identity = 84/172 (48.84%), Postives = 112/172 (65.12%), Query Frame = 2
Query:    2 CKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--ASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGXXXXXXXXXXXXXXXXXF-SGPRWDALVKKGA 508
            C +    ++ ++G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GISVNVTLIFS+ R+ EVIDAYL G+E  A    DLS++ SVASFFVSRVDT IDK LEK+G+ +AL LRG                 F  G R+  L+ +GA
Sbjct:   94 CDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVTLIFSVQRHREVIDAYLAGIEKAAEAGRDLSKIVSVASFFVSRVDTEIDKRLEKLGSEQALALRGQAGVANARLAYAAYQKAFEGGQRYQTLMARGA 265          
The following BLAST results are available for this feature:
BLAST of CX288859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_ACIC11.416e-3850.88Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL1_STRAW1.416e-3854.12Transaldolase 1 OS=Streptomyces avermitilis GN=tal... [more]
TAL2_STRAW7.771e-3753.53Transaldolase 2 OS=Streptomyces avermitilis GN=tal... [more]
TAL1_STRCO7.771e-3754.55Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]
TAL2_STRCO1.326e-3652.35Transaldolase 2 OS=Streptomyces coelicolor GN=tal2... [more]
TAL_FRAAA1.731e-3648.54Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL_THEFY2.953e-3652.12Transaldolase OS=Thermobifida fusca (strain YX) GN... [more]
TAL_FRASC5.037e-3649.42Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL_MYCLE1.466e-3548.84Transaldolase OS=Mycobacterium leprae GN=tal PE=3 ... [more]
TAL_MYCLB1.466e-3548.84Transaldolase OS=Mycobacterium leprae (strain Br49... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006C02SK IF1 Citrus clementina cDNA clone C02006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288859 ID=CX288859; Name=CX288859; organism=Citrus clementina; type=EST; length=509bp
ATGCAAACTTTTTGAGTCAATCTATGATGAAACCAATGGCGGTGATGGCT
ATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACT
GTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATA
CATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTA
TTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCCTGGCTAGA
TATGAAGAAGTCATTGATGCTTACTTGGATGGCCTTGAGGCTTCTGGGCT
GAGTGACCTTTCCAGAGTTACAAGTGTTGCATCCTTTTTCGTTAGTCGAG
TAGACACCCTTATTGACAAAATGCTTGAAAAGATTGGAACCCCAGAAGCC
CTAGATCTCCGAGGAAAGGCAGCAGTAGCTCAGGCAGCTCTAGCATACCA
GCTGTACCAGAAGAAGTTCTCTGGTCCAAGATGGGACGCTCTTGTGAAGA
AAGGTGCAA
back to top